A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5156.1
nTPM
Monaco:
12697.8
nTPM
Schmiedel:
785.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5156.1
HPA sample
nTPM
Memory B-cell nTPM: 5156.1
Samples: 6
Max nTPM: 7419.0
Min nTPM: 2225.9
P10809_1017
7419.0
P10809_1025
6359.5
P10809_1044
2225.9
P10809_1063
4477.1
P10809_1092
4867.2
P10809_1105
5587.8
Naive B-cell nTPM: 4861.4
Samples: 6
Max nTPM: 5501.0
Min nTPM: 4240.4
P10809_1011
5501.0
P10809_1029
4957.6
P10809_1048
4273.6
P10809_1067
4240.4
P10809_1091
5119.6
P10809_1104
5076.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12697.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 11059.2
Samples: 4
Max nTPM: 14152.2
Min nTPM: 8683.0
RHH5310_R3677
14152.2
RHH5218_R3590
12568.9
RHH5247_R3619
8832.6
RHH5276_R3648
8683.0
Naive B-cell nTPM: 9307.1
Samples: 4
Max nTPM: 13499.4
Min nTPM: 5942.6
RHH5308_R3675
9466.3
RHH5216_R3588
13499.4
RHH5245_R3617
5942.6
RHH5274_R3646
8320.0
Non-switched memory B-cell nTPM: 9376.9
Samples: 4
Max nTPM: 11205.9
Min nTPM: 7879.6
RHH5309_R3676
10250.5
RHH5217_R3589
11205.9
RHH5246_R3618
8171.5
RHH5275_R3647
7879.6
Plasmablast nTPM: 10792.7
Samples: 4
Max nTPM: 14698.8
Min nTPM: 9163.4
RHH5312_R3679
9827.2
RHH5220_R3592
14698.8
RHH5249_R3621
9163.4
RHH5278_R3650
9481.3
Switched memory B-cell nTPM: 12697.8
Samples: 4
Max nTPM: 13581.3
Min nTPM: 10511.5
RHH5311_R3678
13581.3
RHH5219_R3591
13322.7
RHH5248_R3620
13375.7
RHH5277_R3649
10511.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
785.0
Schmiedel sample id
TPM
Naive B-cell TPM: 785.0
Samples: 91
Max TPM: 1466.8
Min TPM: 431.3
B_CELL_NAIVE_1
1466.8
B_CELL_NAIVE_2
1237.5
B_CELL_NAIVE_3
1172.4
B_CELL_NAIVE_4
1144.2
B_CELL_NAIVE_5
1143.8
B_CELL_NAIVE_6
1109.9
B_CELL_NAIVE_7
1106.4
B_CELL_NAIVE_8
1054.3
B_CELL_NAIVE_9
1051.3
B_CELL_NAIVE_10
1036.2
B_CELL_NAIVE_11
978.9
B_CELL_NAIVE_12
977.8
B_CELL_NAIVE_13
973.9
B_CELL_NAIVE_14
968.6
B_CELL_NAIVE_15
963.7
B_CELL_NAIVE_16
932.2
B_CELL_NAIVE_17
923.0
B_CELL_NAIVE_18
919.5
B_CELL_NAIVE_19
900.8
B_CELL_NAIVE_20
893.9
B_CELL_NAIVE_21
888.1
B_CELL_NAIVE_22
887.7
B_CELL_NAIVE_23
873.9
B_CELL_NAIVE_24
867.4
B_CELL_NAIVE_25
859.5
B_CELL_NAIVE_26
859.5
B_CELL_NAIVE_27
857.7
B_CELL_NAIVE_28
855.9
B_CELL_NAIVE_29
855.3
B_CELL_NAIVE_30
854.9
B_CELL_NAIVE_31
854.5
B_CELL_NAIVE_32
853.9
B_CELL_NAIVE_33
849.0
B_CELL_NAIVE_34
848.2
B_CELL_NAIVE_35
839.4
B_CELL_NAIVE_36
839.2
B_CELL_NAIVE_37
835.1
B_CELL_NAIVE_38
830.7
B_CELL_NAIVE_39
828.5
B_CELL_NAIVE_40
816.8
B_CELL_NAIVE_41
807.4
B_CELL_NAIVE_42
805.3
B_CELL_NAIVE_43
800.1
B_CELL_NAIVE_44
793.0
B_CELL_NAIVE_45
791.7
B_CELL_NAIVE_46
788.5
B_CELL_NAIVE_47
784.5
B_CELL_NAIVE_48
780.2
B_CELL_NAIVE_49
768.9
B_CELL_NAIVE_50
768.3
B_CELL_NAIVE_51
759.2
B_CELL_NAIVE_52
756.7
B_CELL_NAIVE_53
754.6
B_CELL_NAIVE_54
754.3
B_CELL_NAIVE_55
732.9
B_CELL_NAIVE_56
730.7
B_CELL_NAIVE_57
727.0
B_CELL_NAIVE_58
717.1
B_CELL_NAIVE_59
717.0
B_CELL_NAIVE_60
710.7
B_CELL_NAIVE_61
710.4
B_CELL_NAIVE_62
702.1
B_CELL_NAIVE_63
695.8
B_CELL_NAIVE_64
695.2
B_CELL_NAIVE_65
688.1
B_CELL_NAIVE_66
685.3
B_CELL_NAIVE_67
682.2
B_CELL_NAIVE_68
676.6
B_CELL_NAIVE_69
665.8
B_CELL_NAIVE_70
658.4
B_CELL_NAIVE_71
656.4
B_CELL_NAIVE_72
655.8
B_CELL_NAIVE_73
650.7
B_CELL_NAIVE_74
636.4
B_CELL_NAIVE_75
609.0
B_CELL_NAIVE_76
586.0
B_CELL_NAIVE_77
583.7
B_CELL_NAIVE_78
549.9
B_CELL_NAIVE_79
526.0
B_CELL_NAIVE_80
523.8
B_CELL_NAIVE_81
522.4
B_CELL_NAIVE_82
517.8
B_CELL_NAIVE_83
510.9
B_CELL_NAIVE_84
506.6
B_CELL_NAIVE_85
501.3
B_CELL_NAIVE_86
494.2
B_CELL_NAIVE_87
490.7
B_CELL_NAIVE_88
466.4
B_CELL_NAIVE_89
462.3
B_CELL_NAIVE_90
439.1
B_CELL_NAIVE_91
431.3
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.