A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22992.2
nTPM
Monaco:
36671.2
nTPM
Schmiedel:
6197.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22992.2
HPA sample
nTPM
Classical monocyte nTPM: 18131.8
Samples: 6
Max nTPM: 49810.9
Min nTPM: 9722.8
P10809_1003
49810.9
P10809_1020
14970.6
P10809_1039
10183.7
P10809_1058
9722.8
P10809_1080
11927.0
P10809_1107
12176.0
Intermediate monocyte nTPM: 19674.6
Samples: 6
Max nTPM: 22580.7
Min nTPM: 12858.9
P10809_1004
20091.0
P10809_1023
22580.7
P10809_1042
22427.0
P10809_1061
21232.8
P10809_1081
12858.9
P10809_1108
18857.0
Non-classical monocyte nTPM: 22992.2
Samples: 5
Max nTPM: 31382.4
Min nTPM: 13777.8
P10809_1005
28418.4
P10809_1053
20257.6
P10809_1072
31382.4
P10809_1082
13777.8
P10809_1109
21124.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
36671.2
Monaco sample
nTPM
Classical monocyte nTPM: 31624.2
Samples: 4
Max nTPM: 34839.4
Min nTPM: 25939.8
RHH5313_R3680
33772.6
RHH5221_R3593
34839.4
RHH5250_R3622
31945.0
RHH5279_R3651
25939.8
Intermediate monocyte nTPM: 32338.9
Samples: 4
Max nTPM: 32919.4
Min nTPM: 31149.4
RHH5314_R3681
32712.1
RHH5222_R3594
31149.4
RHH5251_R3623
32919.4
RHH5280_R3652
32574.9
Non-classical monocyte nTPM: 36671.2
Samples: 4
Max nTPM: 42096.9
Min nTPM: 32610.9
RHH5315_R3682
42096.9
RHH5223_R3595
32610.9
RHH5252_R3624
37828.7
RHH5281_R3653
34148.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6197.7
Schmiedel sample id
TPM
Classical monocyte TPM: 4479.8
Samples: 91
Max TPM: 6197.6
Min TPM: 3152.7
MONOCYTES_1
6197.6
MONOCYTES_2
6093.7
MONOCYTES_3
5947.1
MONOCYTES_4
5735.0
MONOCYTES_5
5726.8
MONOCYTES_6
5607.6
MONOCYTES_7
5491.7
MONOCYTES_8
5426.3
MONOCYTES_9
5386.6
MONOCYTES_10
5364.2
MONOCYTES_11
5357.7
MONOCYTES_12
5318.0
MONOCYTES_13
5316.4
MONOCYTES_14
5091.9
MONOCYTES_15
5066.5
MONOCYTES_16
5037.3
MONOCYTES_17
5005.6
MONOCYTES_18
4985.9
MONOCYTES_19
4931.4
MONOCYTES_20
4917.5
MONOCYTES_21
4912.4
MONOCYTES_22
4910.3
MONOCYTES_23
4883.6
MONOCYTES_24
4882.5
MONOCYTES_25
4879.3
MONOCYTES_26
4864.2
MONOCYTES_27
4823.9
MONOCYTES_28
4813.3
MONOCYTES_29
4811.0
MONOCYTES_30
4810.4
MONOCYTES_31
4807.9
MONOCYTES_32
4778.2
MONOCYTES_33
4769.4
MONOCYTES_34
4745.3
MONOCYTES_35
4732.1
MONOCYTES_36
4710.5
MONOCYTES_37
4684.9
MONOCYTES_38
4655.0
MONOCYTES_39
4646.1
MONOCYTES_40
4642.9
MONOCYTES_41
4623.5
MONOCYTES_42
4619.9
MONOCYTES_43
4573.2
MONOCYTES_44
4531.8
MONOCYTES_45
4526.3
MONOCYTES_46
4486.3
MONOCYTES_47
4457.9
MONOCYTES_48
4451.5
MONOCYTES_49
4438.4
MONOCYTES_50
4416.1
MONOCYTES_51
4350.7
MONOCYTES_52
4330.0
MONOCYTES_53
4324.7
MONOCYTES_54
4318.2
MONOCYTES_55
4278.3
MONOCYTES_56
4254.1
MONOCYTES_57
4253.1
MONOCYTES_58
4247.6
MONOCYTES_59
4232.7
MONOCYTES_60
4181.2
MONOCYTES_61
4125.1
MONOCYTES_62
4029.4
MONOCYTES_63
3998.9
MONOCYTES_64
3993.4
MONOCYTES_65
3942.9
MONOCYTES_66
3921.2
MONOCYTES_67
3916.7
MONOCYTES_68
3908.1
MONOCYTES_69
3888.0
MONOCYTES_70
3882.1
MONOCYTES_71
3869.8
MONOCYTES_72
3838.6
MONOCYTES_73
3838.6
MONOCYTES_74
3818.0
MONOCYTES_75
3817.8
MONOCYTES_76
3799.4
MONOCYTES_77
3785.2
MONOCYTES_78
3761.1
MONOCYTES_79
3746.5
MONOCYTES_80
3731.1
MONOCYTES_81
3718.4
MONOCYTES_82
3669.5
MONOCYTES_83
3634.3
MONOCYTES_84
3598.5
MONOCYTES_85
3575.6
MONOCYTES_86
3503.3
MONOCYTES_87
3452.4
MONOCYTES_88
3446.9
MONOCYTES_89
3423.4
MONOCYTES_90
3211.0
MONOCYTES_91
3152.7
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Non-classical monocyte TPM: 6197.7
Samples: 90
Max TPM: 9336.7
Min TPM: 3730.7
M2_1
9336.7
M2_2
8639.6
M2_3
8588.0
M2_4
8199.4
M2_5
7825.8
M2_6
7794.6
M2_7
7790.7
M2_8
7628.6
M2_9
7624.9
M2_10
7556.1
M2_11
7512.2
M2_12
7420.4
M2_13
7399.4
M2_14
7397.6
M2_15
7396.0
M2_16
7347.4
M2_17
7343.7
M2_18
7266.4
M2_19
7256.7
M2_20
7246.7
M2_21
7244.4
M2_22
7166.9
M2_23
7082.8
M2_24
7049.5
M2_25
7013.9
M2_26
6977.3
M2_27
6946.7
M2_28
6923.0
M2_29
6846.3
M2_30
6820.5
M2_31
6805.8
M2_32
6803.0
M2_33
6758.4
M2_34
6757.0
M2_35
6748.9
M2_36
6629.5
M2_37
6629.2
M2_38
6575.5
M2_39
6573.0
M2_40
6530.1
M2_41
6490.5
M2_42
6458.4
M2_43
6433.9
M2_44
6217.1
M2_45
6198.8
M2_46
6192.0
M2_47
6136.4
M2_48
6136.1
M2_49
6097.4
M2_50
6081.3
M2_51
6080.2
M2_52
6079.1
M2_53
6065.4
M2_54
5872.8
M2_55
5854.0
M2_56
5836.2
M2_57
5770.5
M2_58
5658.0
M2_59
5600.6
M2_60
5565.3
M2_61
5554.6
M2_62
5450.9
M2_63
5370.7
M2_64
5276.2
M2_65
5242.1
M2_66
5171.6
M2_67
5163.5
M2_68
5162.6
M2_69
5109.2
M2_70
5103.9
M2_71
5099.3
M2_72
5030.7
M2_73
5026.4
M2_74
5012.7
M2_75
4993.4
M2_76
4979.1
M2_77
4922.5
M2_78
4836.3
M2_79
4816.8
M2_80
4752.2
M2_81
4582.3
M2_82
4575.0
M2_83
4538.6
M2_84
4464.2
M2_85
4408.8
M2_86
4398.5
M2_87
4384.8
M2_88
4326.7
M2_89
4030.1
M2_90
3730.7
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