A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6250.3
nTPM
Monaco:
18559.5
nTPM
Schmiedel:
2945.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6250.3
HPA sample
nTPM
NK-cell nTPM: 6250.3
Samples: 6
Max nTPM: 7819.5
Min nTPM: 5004.0
P10809_1013
6411.7
P10809_1033
7819.5
P10809_1052
5965.6
P10809_1071
5004.0
P10809_1093
5696.7
P10809_1103
6604.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18559.5
Monaco sample
nTPM
NK-cell nTPM: 18559.6
Samples: 4
Max nTPM: 22264.9
Min nTPM: 13416.9
RHH5316_R3683
22174.4
RHH5224_R3596
22264.9
RHH5253_R3625
13416.9
RHH5282_R3654
16382.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2945.4
Schmiedel sample id
TPM
NK-cell TPM: 2945.4
Samples: 90
Max TPM: 5325.7
Min TPM: 1483.0
NK_1
5325.7
NK_2
5220.5
NK_3
4731.6
NK_4
4395.2
NK_5
4172.8
NK_6
4160.9
NK_7
4122.7
NK_8
4088.0
NK_9
4062.5
NK_10
4053.5
NK_11
4009.8
NK_12
3987.2
NK_13
3968.7
NK_14
3957.5
NK_15
3837.7
NK_16
3789.7
NK_17
3770.0
NK_18
3665.8
NK_19
3649.1
NK_20
3647.9
NK_21
3608.7
NK_22
3575.7
NK_23
3530.6
NK_24
3480.5
NK_25
3472.6
NK_26
3457.9
NK_27
3449.7
NK_28
3409.7
NK_29
3361.0
NK_30
3309.8
NK_31
3309.0
NK_32
3307.0
NK_33
3281.2
NK_34
3251.8
NK_35
3193.2
NK_36
3094.8
NK_37
3087.3
NK_38
3059.2
NK_39
3052.5
NK_40
2948.7
NK_41
2939.2
NK_42
2923.8
NK_43
2903.1
NK_44
2888.9
NK_45
2866.4
NK_46
2866.0
NK_47
2852.9
NK_48
2844.8
NK_49
2828.3
NK_50
2826.7
NK_51
2814.9
NK_52
2797.1
NK_53
2789.9
NK_54
2743.8
NK_55
2653.6
NK_56
2591.4
NK_57
2490.7
NK_58
2442.9
NK_59
2435.8
NK_60
2408.7
NK_61
2404.4
NK_62
2374.7
NK_63
2362.6
NK_64
2354.2
NK_65
2342.4
NK_66
2312.3
NK_67
2302.9
NK_68
2285.6
NK_69
2283.6
NK_70
2272.3
NK_71
2265.4
NK_72
2201.7
NK_73
2171.0
NK_74
2157.1
NK_75
2089.5
NK_76
2081.4
NK_77
2061.5
NK_78
1988.5
NK_79
1969.3
NK_80
1935.6
NK_81
1931.0
NK_82
1876.3
NK_83
1826.6
NK_84
1797.6
NK_85
1719.0
NK_86
1685.4
NK_87
1644.6
NK_88
1573.2
NK_89
1562.5
NK_90
1483.0
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