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  • SUMMARY

  • TISSUE

  • BRAIN

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1786.2 nTPM
FANTOM5:2114.2 Scaled Tags Per Million
Pig:1715.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041264Antibody HPA041271Antibody CAB002621
Glial cells Not detectedNot detectedMedium
Neuronal cells LowNot detectedMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1786.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1786.2
Samples: 300

Max nTPM: 3706.7
Min nTPM: 709.4
Std nTPM: 398.0
Median nTPM: 1737.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 3706.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 3221.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 3123.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2980.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 2880.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 2864.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2807.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 2797.2
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 2723.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 2703.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 2661.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 2588.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 2557.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2533.0
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 2522.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 2500.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2496.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2404.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 2358.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 2345.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 2343.8
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2340.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2339.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 2329.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2325.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2313.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2311.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2283.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 2274.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 2266.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 2258.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2254.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 2233.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 2225.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 2215.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 2214.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 2214.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 2194.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2194.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 2194.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 2184.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 2180.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2179.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 2168.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 2162.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 2159.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 2148.8
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2143.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 2140.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 2136.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 2129.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 2127.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 2114.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2102.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2100.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2091.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 2090.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2084.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2080.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 2071.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2070.6
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2066.1
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2056.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2050.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 2049.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 2042.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 2040.8
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2035.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2022.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2017.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2015.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 2001.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 2000.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1998.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1996.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1990.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1989.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1983.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1981.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1975.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 1971.5
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1969.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 1962.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1962.1
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1961.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1961.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1958.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1955.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1954.3
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1952.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 1945.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 1943.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1931.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 1926.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1924.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1923.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1915.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1913.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1909.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1905.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1898.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1893.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1892.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1889.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1888.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1886.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1885.5
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 1879.9
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1877.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1876.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1870.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 1870.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1858.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1854.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 1852.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 1852.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1851.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1849.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1846.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1845.9
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 1844.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1833.4
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1833.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1830.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1829.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1825.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1825.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1808.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1805.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1802.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1802.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1801.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1792.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1791.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1790.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1789.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1788.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1786.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1778.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1758.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1757.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1756.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1754.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1754.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 1749.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1743.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1742.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1742.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1741.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 1738.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1736.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 1733.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1732.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1726.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 1726.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1725.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1721.4
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1720.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1717.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1716.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1715.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1715.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1713.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1699.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1699.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1697.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1694.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1691.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1689.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1689.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1680.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1677.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1673.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1659.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1659.6
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1650.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1649.3
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1643.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 1641.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1641.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1637.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1631.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 1629.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1628.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1627.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1625.1
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1623.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1622.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1616.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1616.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1613.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1612.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1610.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1603.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1603.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 1603.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1599.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1598.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1588.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1588.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1587.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1577.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1573.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1571.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1571.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1568.0
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1567.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1566.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1563.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1562.8
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1562.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1562.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1562.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1559.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1556.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1554.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1552.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1552.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1549.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1548.7
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 1540.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1540.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1540.5
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1539.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1536.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1529.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1525.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1518.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1518.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1502.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1495.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 1494.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1490.4
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1488.8
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1488.0
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1486.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1483.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1482.7
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1481.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1478.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1473.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1472.9
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1472.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1461.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1461.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1458.6
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 1450.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1448.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1448.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1444.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 1443.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1441.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1425.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1424.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1424.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1417.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1415.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1415.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1408.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1401.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 1397.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1386.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1384.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1377.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1351.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 1350.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1342.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1335.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1335.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1332.4
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 1323.9
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1319.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1309.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1299.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1297.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1295.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1290.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1289.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1288.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 1282.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1276.0
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1272.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1259.7
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 1243.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1238.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1209.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1192.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 1179.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 1175.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1165.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1158.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1154.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1133.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 1132.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 1107.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1106.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1105.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1092.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1049.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 709.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2114.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2114.2
FF:10164-103B2 76 years, female 2114.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1715.6
Pig sample Sample description nTPM
Caudate
nTPM: 1715.6
Samples: 4

Max nTPM: 1953.8
Min nTPM: 1481.6
Sample A Female 1569.8
Sample B Female 1857.3
Sample C Male 1953.8
Sample D Male 1481.6

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