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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Cells in glomeruli: Low
Cells in tubules: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1740.6 nTPM
HPA:1030.2 nTPM
GTEx:1740.6 nTPM
FANTOM5:4748.0 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041264Antibody HPA041271Antibody CAB002621
Cells in glomeruli LowLowMedium
Cells in tubules MediumMediumLow





KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1030.2
overview
Female, age 58
Kidney sample 55
nTPM: 740.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 772.2
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 1118.6
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 931.7
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 1647.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 1297.4
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 1239.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 579.2
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 945.8
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1740.6
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 1740.6
Samples: 104

Max nTPM: 2857.7
Min nTPM: 829.3
Std nTPM: 464.7
Median nTPM: 1689.2
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 2857.7
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 2772.0
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 2727.6
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 2713.9
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 2549.3
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 2547.4
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 2475.9
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 2472.6
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 2468.6
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 2450.8
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 2437.8
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 2426.1
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 2376.7
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 2375.5
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 2348.5
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 2347.3
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 2272.1
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 2244.5
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 2198.0
GTEX-14C39-2126-SM-664OH 40-49 years, male 2155.1
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 2148.1
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 2147.3
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 2078.3
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 2069.7
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 2059.1
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 2057.7
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 2045.4
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 2028.7
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 2021.6
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 1992.2
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 1989.0
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 1986.3
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 1978.1
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 1954.4
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 1934.2
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 1926.2
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 1880.6
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 1873.4
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 1859.5
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 1824.6
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 1822.6
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 1812.1
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 1799.1
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 1795.0
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 1758.7
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 1740.0
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 1726.1
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 1717.1
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 1713.7
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 1705.8
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 1702.7
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 1690.1
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 1688.2
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 1685.7
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 1673.8
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 1663.1
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 1647.6
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 1647.5
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 1633.3
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 1617.0
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 1607.8
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 1606.5
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 1591.9
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 1588.0
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 1577.4
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 1545.2
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 1544.0
GTEX-12696-0926-SM-5FQTV 60-69 years, male 1527.5
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 1492.6
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 1473.4
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 1463.8
GTEX-O5YV-1226-SM-EV795 60-69 years, female 1455.7
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 1447.5
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 1444.1
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 1440.4
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 1432.3
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 1394.8
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 1385.4
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 1381.1
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 1379.8
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 1378.9
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 1375.4
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 1350.3
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 1346.2
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 1322.0
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 1315.4
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 1284.1
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 1236.0
GTEX-13112-2126-SM-5GCO4 50-59 years, male 1235.2
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 1213.6
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 1209.5
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 1174.7
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 1163.3
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 1149.6
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 1117.4
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 1091.7
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 1058.2
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 1050.6
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 1049.5
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 1041.2
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 1008.2
GTEX-RN64-1626-SM-48FD7 50-59 years, male 970.0
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 958.0
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 829.3
Show allShow less
Kidney - Medulla
Average nTPM: 1713.8
Samples: 11

Max nTPM: 2477.7
Min nTPM: 1032.8
Std nTPM: 463.1
Median nTPM: 1718.3
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 2477.7
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 2399.2
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 2093.1
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 1880.6
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 1816.0
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 1718.3
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 1565.9
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 1433.8
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 1398.8
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 1035.4
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 1032.8
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4748.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 4748.0
FF:10017-101C8 60,62,63 years, female 4748.0

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