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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
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Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:452.4 nTPM
GTEx:452.4 nTPM
FANTOM5:2638.9 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

452.4
GTEx sample id Sample description nTPM
Retina
Average nTPM: 452.4
Samples: 105

Max nTPM: 1225.5
Min nTPM: 222.8
Std nTPM: 155.5
Median nTPM:
308_1 70 years, female 1225.5
17_1 71 years, male 811.3
315_1 62 years, female 806.4
307_1 66 years, female 752.4
295_1 61 years, female 743.4
501_1 88 years, male 740.8
288_1 66 years, female 702.2
495_1 57 years, female 691.1
452_1 88 years, female 685.6
137_1 83 years, male 679.0
491_1 89 years, female 651.0
41_1 94 years, female 650.4
379_1 60 years, male 645.3
354_1 81 years, female 617.7
4_1 88 years, female 617.6
109_1 81 years, female 606.5
316_1 62 years, male 592.9
2_1 77 years, female 591.1
162_1 79 years, female 587.1
145_1 84 years, male 585.7
218_1 71 years, female 575.1
120_1 70 years, female 569.6
384_1 83 years, male 552.2
349_1 83 years, male 551.8
351_1 91 years, male 546.3
139_1 64 years, female 546.1
43_1 64 years, female 528.1
518_1 75 years, female 513.2
314_1 67 years, male 509.9
353_1 82 years, female 509.1
394_1 75 years, female 506.6
142_1 61 years, female 504.3
173_1 67 years, male 502.6
322_1 76 years, male 499.9
254_1 77 years, female 486.5
335_1 73 years, female 485.8
42_1 85 years, male 480.5
189_1 76 years, male 477.8
414_1 84 years, female 476.7
6_1 73 years, female 475.4
396_1 62 years, male 472.4
447_1 81 years, male 463.9
119_1 70 years, female 462.8
18_1 88 years, male 462.0
317_1 60 years, male 459.3
117_1 61 years, male 453.0
35_1 74 years, female 452.8
350_1 84 years, female 445.6
490_1 67 years, female 442.2
313_1 79 years, female 438.8
413_1 59 years, female 427.3
386_1 76 years, male 427.1
319_1 81 years, male 424.5
377_1 82 years, female 423.4
389_1 86 years, female 412.8
324_1 76 years, male 410.8
126_1 63 years, male 409.6
291_1 76 years, male 400.8
376_1 75 years, female 381.3
347_1 72 years, male 379.7
404_1 82 years, female 377.1
89_1 63 years, male 376.6
311_1 78 years, male 376.4
526_1 61 years, male 376.0
286_1 68 years, female 375.2
265_1 87 years, male 373.7
264_1 73 years, female 369.2
375_1 74 years, female 367.4
153_1 70 years, female 366.5
415_1 77 years, female 363.7
266_1 85 years, male 363.0
163_1 78 years, male 360.8
243_1 75 years, male 360.2
506_1 65 years, male 357.7
320_1 89 years, female 354.1
466_1 57 years, female 350.9
468_1 89 years, male 347.5
81_1 67 years, male 343.6
352_1 62 years, male 339.8
348_1 84 years, male 338.8
115_1 83 years, male 332.5
149_1 88 years, male 327.3
237_1 82 years, male 326.2
32_1 67 years, male 322.7
177_1 74 years, male 321.6
9_1 66 years, female 317.3
251_1 78 years, male 314.4
318_1 68 years, male 313.8
425_1 59 years, female 305.6
356_1 87 years, female 305.4
499_1 55 years, female 302.8
517_1 88 years, male 299.9
406_1 79 years, male 293.5
321_1 62 years, female 290.3
503_1 68 years, male 287.1
405_1 91 years, male 283.2
480_1 63 years, male 275.0
292_1 71 years, male 274.1
99_1 64 years, male 272.9
293_1 68 years, female 271.9
217_1 76 years, male 271.5
355_1 70 years, female 267.7
229_1 69 years, female 266.4
172_1 72 years, female 263.3
246_1 77 years, male 222.8
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2638.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2638.9
FF:10030-101E3 24-65 years, mixed 2638.9

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