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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:2531.9 nTPM
GTEx:2531.9 nTPM
FANTOM5:3635.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA041264Antibody HPA041271Antibody CAB002621
Squamous epithelial cells MediumNot detectedNot detected





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2531.9
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 2531.9
Samples: 170

Max nTPM: 6320.5
Min nTPM: 946.2
Std nTPM: 949.6
Median nTPM: 2452.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 6320.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 5951.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 5138.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 5053.4
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 5013.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 4967.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 4701.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 4597.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 4568.8
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 4567.5
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 4402.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 4194.2
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 4166.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 3942.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 3912.5
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 3893.4
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 3710.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 3698.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 3611.8
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 3443.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 3407.4
GTEX-14PKU-1326-SM-6871B 40-49 years, female 3366.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 3332.6
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 3318.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 3279.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 3240.4
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 3208.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 3188.6
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 3170.3
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 3166.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 3137.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 3129.8
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 3121.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 3117.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 3066.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 3032.5
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 3011.6
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 2992.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 2982.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 2978.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 2959.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 2940.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 2929.0
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 2927.3
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 2916.6
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 2903.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 2885.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 2877.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 2864.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 2849.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2845.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 2826.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 2814.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 2813.8
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 2809.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 2809.0
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 2802.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 2785.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 2757.1
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2752.5
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 2749.1
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 2740.2
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 2736.2
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 2715.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 2662.6
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 2640.1
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 2634.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 2624.6
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 2594.3
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 2593.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 2592.7
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 2585.3
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2581.4
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 2575.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 2568.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 2540.2
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 2536.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2526.8
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2513.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 2480.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 2472.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2471.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 2460.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 2457.2
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2456.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2447.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2441.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 2424.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 2415.9
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 2397.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 2379.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 2374.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 2351.5
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 2346.7
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2330.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2327.5
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 2296.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 2287.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 2282.2
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2279.1
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 2253.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 2252.0
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 2193.8
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 2162.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 2157.2
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 2145.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 2135.8
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 2134.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 2121.2
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 2101.1
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 2089.1
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 2087.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2085.6
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 2078.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 2071.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 2071.1
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 2044.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2031.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2014.2
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1978.2
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1974.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1966.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1964.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1948.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1917.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1885.1
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1881.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1874.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1845.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1843.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1840.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1822.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1815.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1779.9
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1757.3
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1738.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1725.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1714.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1706.6
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1691.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1679.4
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1657.4
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1650.6
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1634.4
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1567.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1566.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1531.4
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1487.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1473.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1456.5
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1454.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1449.8
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1426.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1419.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1409.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1400.6
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1359.8
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1329.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1322.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1314.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1291.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1276.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 1270.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1252.1
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1231.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1186.2
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1183.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1131.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1092.8
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 946.2
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3635.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 3635.6
FF:10204-103F6 68 years, female 3635.6

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