A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.9
nTPM
Monaco:
118.5
nTPM
Schmiedel:
218.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.9
HPA sample
nTPM
Memory B-cell nTPM: 6.9
Samples: 6
Max nTPM: 22.9
Min nTPM: 0.7
P10809_1017
7.2
P10809_1025
0.7
P10809_1044
22.9
P10809_1063
4.9
P10809_1092
2.2
P10809_1105
3.4
Naive B-cell nTPM: 6.0
Samples: 6
Max nTPM: 13.4
Min nTPM: 0.0
P10809_1011
13.4
P10809_1029
5.0
P10809_1048
0.0
P10809_1067
7.6
P10809_1091
5.4
P10809_1104
4.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
118.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 78.9
Samples: 4
Max nTPM: 98.6
Min nTPM: 60.4
RHH5310_R3677
60.4
RHH5218_R3590
98.6
RHH5247_R3619
78.7
RHH5276_R3648
77.8
Naive B-cell nTPM: 94.8
Samples: 4
Max nTPM: 122.7
Min nTPM: 77.9
RHH5308_R3675
81.8
RHH5216_R3588
77.9
RHH5245_R3617
122.7
RHH5274_R3646
96.7
Non-switched memory B-cell nTPM: 118.6
Samples: 4
Max nTPM: 140.3
Min nTPM: 98.0
RHH5309_R3676
98.0
RHH5217_R3589
128.8
RHH5246_R3618
140.3
RHH5275_R3647
107.1
Plasmablast nTPM: 99.8
Samples: 4
Max nTPM: 115.4
Min nTPM: 70.3
RHH5312_R3679
106.5
RHH5220_R3592
70.3
RHH5249_R3621
107.1
RHH5278_R3650
115.4
Switched memory B-cell nTPM: 80.7
Samples: 4
Max nTPM: 105.7
Min nTPM: 66.5
RHH5311_R3678
66.5
RHH5219_R3591
71.6
RHH5248_R3620
79.1
RHH5277_R3649
105.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
218.1
Schmiedel sample id
TPM
Naive B-cell TPM: 218.1
Samples: 91
Max TPM: 328.2
Min TPM: 129.8
B_CELL_NAIVE_1
328.2
B_CELL_NAIVE_2
303.9
B_CELL_NAIVE_3
303.6
B_CELL_NAIVE_4
284.9
B_CELL_NAIVE_5
284.6
B_CELL_NAIVE_6
274.4
B_CELL_NAIVE_7
271.9
B_CELL_NAIVE_8
263.2
B_CELL_NAIVE_9
262.3
B_CELL_NAIVE_10
258.4
B_CELL_NAIVE_11
253.4
B_CELL_NAIVE_12
252.9
B_CELL_NAIVE_13
252.6
B_CELL_NAIVE_14
252.3
B_CELL_NAIVE_15
251.3
B_CELL_NAIVE_16
250.9
B_CELL_NAIVE_17
248.9
B_CELL_NAIVE_18
247.3
B_CELL_NAIVE_19
246.8
B_CELL_NAIVE_20
246.1
B_CELL_NAIVE_21
245.5
B_CELL_NAIVE_22
244.5
B_CELL_NAIVE_23
240.3
B_CELL_NAIVE_24
240.1
B_CELL_NAIVE_25
239.3
B_CELL_NAIVE_26
239.2
B_CELL_NAIVE_27
238.7
B_CELL_NAIVE_28
238.3
B_CELL_NAIVE_29
238.0
B_CELL_NAIVE_30
237.6
B_CELL_NAIVE_31
236.6
B_CELL_NAIVE_32
235.9
B_CELL_NAIVE_33
234.4
B_CELL_NAIVE_34
229.3
B_CELL_NAIVE_35
228.5
B_CELL_NAIVE_36
228.5
B_CELL_NAIVE_37
226.8
B_CELL_NAIVE_38
226.4
B_CELL_NAIVE_39
225.9
B_CELL_NAIVE_40
225.6
B_CELL_NAIVE_41
224.5
B_CELL_NAIVE_42
223.9
B_CELL_NAIVE_43
222.8
B_CELL_NAIVE_44
222.5
B_CELL_NAIVE_45
221.9
B_CELL_NAIVE_46
221.4
B_CELL_NAIVE_47
219.6
B_CELL_NAIVE_48
219.2
B_CELL_NAIVE_49
219.1
B_CELL_NAIVE_50
218.9
B_CELL_NAIVE_51
218.1
B_CELL_NAIVE_52
214.7
B_CELL_NAIVE_53
213.2
B_CELL_NAIVE_54
212.8
B_CELL_NAIVE_55
212.5
B_CELL_NAIVE_56
212.4
B_CELL_NAIVE_57
211.4
B_CELL_NAIVE_58
211.3
B_CELL_NAIVE_59
210.9
B_CELL_NAIVE_60
210.7
B_CELL_NAIVE_61
204.9
B_CELL_NAIVE_62
202.6
B_CELL_NAIVE_63
200.7
B_CELL_NAIVE_64
199.5
B_CELL_NAIVE_65
198.6
B_CELL_NAIVE_66
196.8
B_CELL_NAIVE_67
196.7
B_CELL_NAIVE_68
196.2
B_CELL_NAIVE_69
195.3
B_CELL_NAIVE_70
193.2
B_CELL_NAIVE_71
191.9
B_CELL_NAIVE_72
187.0
B_CELL_NAIVE_73
185.9
B_CELL_NAIVE_74
184.6
B_CELL_NAIVE_75
184.1
B_CELL_NAIVE_76
183.9
B_CELL_NAIVE_77
181.1
B_CELL_NAIVE_78
177.7
B_CELL_NAIVE_79
176.2
B_CELL_NAIVE_80
172.1
B_CELL_NAIVE_81
172.1
B_CELL_NAIVE_82
165.8
B_CELL_NAIVE_83
158.3
B_CELL_NAIVE_84
156.1
B_CELL_NAIVE_85
153.2
B_CELL_NAIVE_86
148.7
B_CELL_NAIVE_87
146.1
B_CELL_NAIVE_88
142.3
B_CELL_NAIVE_89
142.2
B_CELL_NAIVE_90
140.9
B_CELL_NAIVE_91
129.8
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