A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.3
nTPM
Monaco:
117.1
nTPM
Schmiedel:
167.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.3
HPA sample
nTPM
NK-cell nTPM: 17.3
Samples: 6
Max nTPM: 83.4
Min nTPM: 1.4
P10809_1013
5.8
P10809_1033
1.4
P10809_1052
1.9
P10809_1071
7.0
P10809_1093
83.4
P10809_1103
4.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.1
Monaco sample
nTPM
NK-cell nTPM: 117.1
Samples: 4
Max nTPM: 143.1
Min nTPM: 80.9
RHH5316_R3683
139.2
RHH5224_R3596
105.2
RHH5253_R3625
143.1
RHH5282_R3654
80.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
167.0
Schmiedel sample id
TPM
NK-cell TPM: 167.0
Samples: 90
Max TPM: 214.8
Min TPM: 79.8
NK_1
214.8
NK_2
202.2
NK_3
200.6
NK_4
200.3
NK_5
197.6
NK_6
196.6
NK_7
194.4
NK_8
193.6
NK_9
192.7
NK_10
192.6
NK_11
191.7
NK_12
191.6
NK_13
190.5
NK_14
189.5
NK_15
187.3
NK_16
187.0
NK_17
186.8
NK_18
186.7
NK_19
186.6
NK_20
186.1
NK_21
186.1
NK_22
185.8
NK_23
185.5
NK_24
185.2
NK_25
184.7
NK_26
184.4
NK_27
183.6
NK_28
182.1
NK_29
182.1
NK_30
180.8
NK_31
180.2
NK_32
179.7
NK_33
178.2
NK_34
178.0
NK_35
176.8
NK_36
174.4
NK_37
174.0
NK_38
173.2
NK_39
172.2
NK_40
171.3
NK_41
171.2
NK_42
171.0
NK_43
170.8
NK_44
170.8
NK_45
170.1
NK_46
168.9
NK_47
167.6
NK_48
167.5
NK_49
166.5
NK_50
165.9
NK_51
165.3
NK_52
165.1
NK_53
165.0
NK_54
164.7
NK_55
164.6
NK_56
164.5
NK_57
164.0
NK_58
160.8
NK_59
160.5
NK_60
160.2
NK_61
160.2
NK_62
160.1
NK_63
159.6
NK_64
159.5
NK_65
157.3
NK_66
155.7
NK_67
155.5
NK_68
155.5
NK_69
154.9
NK_70
153.7
NK_71
151.9
NK_72
151.7
NK_73
151.6
NK_74
150.2
NK_75
147.5
NK_76
143.9
NK_77
143.8
NK_78
141.0
NK_79
138.4
NK_80
136.5
NK_81
133.5
NK_82
133.3
NK_83
132.7
NK_84
127.4
NK_85
126.1
NK_86
124.1
NK_87
121.4
NK_88
119.7
NK_89
115.1
NK_90
79.8
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