A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
15.7
nTPM
Monaco:
121.7
nTPM
Schmiedel:
129.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
15.7
HPA sample
nTPM
Classical monocyte nTPM: 7.6
Samples: 6
Max nTPM: 12.6
Min nTPM: 4.4
P10809_1003
10.0
P10809_1020
5.6
P10809_1039
6.7
P10809_1058
12.6
P10809_1080
6.3
P10809_1107
4.4
Intermediate monocyte nTPM: 6.3
Samples: 6
Max nTPM: 10.3
Min nTPM: 2.5
P10809_1004
8.3
P10809_1023
2.5
P10809_1042
4.0
P10809_1061
10.3
P10809_1081
8.6
P10809_1108
3.9
Non-classical monocyte nTPM: 15.7
Samples: 5
Max nTPM: 56.6
Min nTPM: 1.4
P10809_1005
8.3
P10809_1053
4.7
P10809_1072
56.6
P10809_1082
7.4
P10809_1109
1.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
121.7
Monaco sample
nTPM
Classical monocyte nTPM: 87.3
Samples: 4
Max nTPM: 117.4
Min nTPM: 70.5
RHH5313_R3680
70.5
RHH5221_R3593
78.8
RHH5250_R3622
117.4
RHH5279_R3651
82.3
Intermediate monocyte nTPM: 101.2
Samples: 4
Max nTPM: 112.1
Min nTPM: 88.0
RHH5314_R3681
88.0
RHH5222_R3594
112.1
RHH5251_R3623
102.6
RHH5280_R3652
101.9
Non-classical monocyte nTPM: 121.7
Samples: 4
Max nTPM: 129.0
Min nTPM: 109.3
RHH5315_R3682
121.7
RHH5223_R3595
109.3
RHH5252_R3624
129.0
RHH5281_R3653
126.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
129.9
Schmiedel sample id
TPM
Classical monocyte TPM: 111.0
Samples: 91
Max TPM: 161.2
Min TPM: 84.1
MONOCYTES_1
161.2
MONOCYTES_2
136.7
MONOCYTES_3
135.0
MONOCYTES_4
134.6
MONOCYTES_5
133.5
MONOCYTES_6
133.4
MONOCYTES_7
131.9
MONOCYTES_8
129.1
MONOCYTES_9
129.1
MONOCYTES_10
127.7
MONOCYTES_11
126.2
MONOCYTES_12
125.7
MONOCYTES_13
125.0
MONOCYTES_14
125.0
MONOCYTES_15
124.3
MONOCYTES_16
124.1
MONOCYTES_17
123.8
MONOCYTES_18
122.4
MONOCYTES_19
121.6
MONOCYTES_20
121.1
MONOCYTES_21
120.5
MONOCYTES_22
120.5
MONOCYTES_23
119.3
MONOCYTES_24
119.2
MONOCYTES_25
119.1
MONOCYTES_26
118.3
MONOCYTES_27
117.2
MONOCYTES_28
116.5
MONOCYTES_29
115.3
MONOCYTES_30
115.2
MONOCYTES_31
114.0
MONOCYTES_32
113.8
MONOCYTES_33
113.6
MONOCYTES_34
113.5
MONOCYTES_35
112.4
MONOCYTES_36
111.9
MONOCYTES_37
111.3
MONOCYTES_38
111.1
MONOCYTES_39
110.3
MONOCYTES_40
109.8
MONOCYTES_41
109.7
MONOCYTES_42
109.1
MONOCYTES_43
108.9
MONOCYTES_44
108.9
MONOCYTES_45
108.5
MONOCYTES_46
108.5
MONOCYTES_47
108.0
MONOCYTES_48
107.9
MONOCYTES_49
107.5
MONOCYTES_50
107.2
MONOCYTES_51
106.9
MONOCYTES_52
106.8
MONOCYTES_53
106.7
MONOCYTES_54
106.6
MONOCYTES_55
106.6
MONOCYTES_56
106.5
MONOCYTES_57
106.5
MONOCYTES_58
106.2
MONOCYTES_59
106.2
MONOCYTES_60
106.1
MONOCYTES_61
105.9
MONOCYTES_62
105.9
MONOCYTES_63
105.8
MONOCYTES_64
105.5
MONOCYTES_65
105.5
MONOCYTES_66
104.6
MONOCYTES_67
104.6
MONOCYTES_68
103.1
MONOCYTES_69
102.6
MONOCYTES_70
102.2
MONOCYTES_71
101.9
MONOCYTES_72
101.9
MONOCYTES_73
101.6
MONOCYTES_74
100.1
MONOCYTES_75
100.1
MONOCYTES_76
99.9
MONOCYTES_77
98.0
MONOCYTES_78
98.0
MONOCYTES_79
97.5
MONOCYTES_80
97.4
MONOCYTES_81
96.4
MONOCYTES_82
96.3
MONOCYTES_83
96.2
MONOCYTES_84
94.1
MONOCYTES_85
93.2
MONOCYTES_86
92.6
MONOCYTES_87
91.1
MONOCYTES_88
90.4
MONOCYTES_89
89.7
MONOCYTES_90
87.4
MONOCYTES_91
84.1
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Non-classical monocyte TPM: 130.0
Samples: 90
Max TPM: 166.7
Min TPM: 91.2
M2_1
166.7
M2_2
166.1
M2_3
161.1
M2_4
160.3
M2_5
157.0
M2_6
156.0
M2_7
150.7
M2_8
149.9
M2_9
148.6
M2_10
147.3
M2_11
145.4
M2_12
144.5
M2_13
144.4
M2_14
144.2
M2_15
144.0
M2_16
142.7
M2_17
141.5
M2_18
141.2
M2_19
140.4
M2_20
140.3
M2_21
140.3
M2_22
140.0
M2_23
139.9
M2_24
139.4
M2_25
139.2
M2_26
139.0
M2_27
138.4
M2_28
137.0
M2_29
136.5
M2_30
136.1
M2_31
135.9
M2_32
135.8
M2_33
135.7
M2_34
135.2
M2_35
134.9
M2_36
134.5
M2_37
134.4
M2_38
133.5
M2_39
133.5
M2_40
133.1
M2_41
133.0
M2_42
132.5
M2_43
132.4
M2_44
132.2
M2_45
131.4
M2_46
131.1
M2_47
131.1
M2_48
130.1
M2_49
129.6
M2_50
129.2
M2_51
129.1
M2_52
128.4
M2_53
128.4
M2_54
128.0
M2_55
127.2
M2_56
126.7
M2_57
126.7
M2_58
126.0
M2_59
124.9
M2_60
124.5
M2_61
124.5
M2_62
124.4
M2_63
124.1
M2_64
123.9
M2_65
123.5
M2_66
122.8
M2_67
122.7
M2_68
121.0
M2_69
120.0
M2_70
118.7
M2_71
118.2
M2_72
117.3
M2_73
115.2
M2_74
113.9
M2_75
113.9
M2_76
113.6
M2_77
113.4
M2_78
113.2
M2_79
112.0
M2_80
109.7
M2_81
108.3
M2_82
107.5
M2_83
107.3
M2_84
107.0
M2_85
105.4
M2_86
105.4
M2_87
103.8
M2_88
94.0
M2_89
92.6
M2_90
91.2
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