A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.1
nTPM
Monaco:
46.3
nTPM
Schmiedel:
82.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.1
HPA sample
nTPM
Memory B-cell nTPM: 8.1
Samples: 6
Max nTPM: 11.6
Min nTPM: 3.2
P10809_1017
7.2
P10809_1025
11.6
P10809_1044
3.2
P10809_1063
7.8
P10809_1092
10.7
P10809_1105
8.3
Naive B-cell nTPM: 6.9
Samples: 6
Max nTPM: 10.2
Min nTPM: 4.1
P10809_1011
7.7
P10809_1029
8.4
P10809_1048
4.1
P10809_1067
5.4
P10809_1091
5.6
P10809_1104
10.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 21.3
Samples: 4
Max nTPM: 30.8
Min nTPM: 11.7
RHH5310_R3677
11.7
RHH5218_R3590
30.8
RHH5247_R3619
17.1
RHH5276_R3648
25.7
Naive B-cell nTPM: 33.6
Samples: 4
Max nTPM: 46.4
Min nTPM: 9.7
RHH5308_R3675
46.4
RHH5216_R3588
9.7
RHH5245_R3617
39.5
RHH5274_R3646
38.6
Non-switched memory B-cell nTPM: 46.3
Samples: 4
Max nTPM: 66.8
Min nTPM: 26.5
RHH5309_R3676
49.2
RHH5217_R3589
26.5
RHH5246_R3618
42.8
RHH5275_R3647
66.8
Plasmablast nTPM: 15.3
Samples: 4
Max nTPM: 23.6
Min nTPM: 3.5
RHH5312_R3679
3.5
RHH5220_R3592
23.6
RHH5249_R3621
14.4
RHH5278_R3650
19.7
Switched memory B-cell nTPM: 32.5
Samples: 4
Max nTPM: 58.8
Min nTPM: 14.8
RHH5311_R3678
14.8
RHH5219_R3591
39.8
RHH5248_R3620
16.4
RHH5277_R3649
58.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
82.8
Schmiedel sample id
TPM
Naive B-cell TPM: 82.8
Samples: 91
Max TPM: 198.6
Min TPM: 15.7
B_CELL_NAIVE_1
198.6
B_CELL_NAIVE_2
162.4
B_CELL_NAIVE_3
157.2
B_CELL_NAIVE_4
156.2
B_CELL_NAIVE_5
156.0
B_CELL_NAIVE_6
150.0
B_CELL_NAIVE_7
148.0
B_CELL_NAIVE_8
146.4
B_CELL_NAIVE_9
135.0
B_CELL_NAIVE_10
123.8
B_CELL_NAIVE_11
122.7
B_CELL_NAIVE_12
122.3
B_CELL_NAIVE_13
120.7
B_CELL_NAIVE_14
118.5
B_CELL_NAIVE_15
117.9
B_CELL_NAIVE_16
115.2
B_CELL_NAIVE_17
114.9
B_CELL_NAIVE_18
114.3
B_CELL_NAIVE_19
114.0
B_CELL_NAIVE_20
113.4
B_CELL_NAIVE_21
111.0
B_CELL_NAIVE_22
110.9
B_CELL_NAIVE_23
110.1
B_CELL_NAIVE_24
106.5
B_CELL_NAIVE_25
105.2
B_CELL_NAIVE_26
100.8
B_CELL_NAIVE_27
100.2
B_CELL_NAIVE_28
100.2
B_CELL_NAIVE_29
99.3
B_CELL_NAIVE_30
93.8
B_CELL_NAIVE_31
92.6
B_CELL_NAIVE_32
92.5
B_CELL_NAIVE_33
90.8
B_CELL_NAIVE_34
89.1
B_CELL_NAIVE_35
87.5
B_CELL_NAIVE_36
87.3
B_CELL_NAIVE_37
85.6
B_CELL_NAIVE_38
84.8
B_CELL_NAIVE_39
83.3
B_CELL_NAIVE_40
82.8
B_CELL_NAIVE_41
82.2
B_CELL_NAIVE_42
82.0
B_CELL_NAIVE_43
81.6
B_CELL_NAIVE_44
80.6
B_CELL_NAIVE_45
80.4
B_CELL_NAIVE_46
79.5
B_CELL_NAIVE_47
79.2
B_CELL_NAIVE_48
78.1
B_CELL_NAIVE_49
77.1
B_CELL_NAIVE_50
76.0
B_CELL_NAIVE_51
76.0
B_CELL_NAIVE_52
75.5
B_CELL_NAIVE_53
71.6
B_CELL_NAIVE_54
70.6
B_CELL_NAIVE_55
70.3
B_CELL_NAIVE_56
70.2
B_CELL_NAIVE_57
68.8
B_CELL_NAIVE_58
67.6
B_CELL_NAIVE_59
67.5
B_CELL_NAIVE_60
65.2
B_CELL_NAIVE_61
64.1
B_CELL_NAIVE_62
64.0
B_CELL_NAIVE_63
62.7
B_CELL_NAIVE_64
61.9
B_CELL_NAIVE_65
61.7
B_CELL_NAIVE_66
61.7
B_CELL_NAIVE_67
60.8
B_CELL_NAIVE_68
60.1
B_CELL_NAIVE_69
58.0
B_CELL_NAIVE_70
57.4
B_CELL_NAIVE_71
56.1
B_CELL_NAIVE_72
55.4
B_CELL_NAIVE_73
54.9
B_CELL_NAIVE_74
52.6
B_CELL_NAIVE_75
51.2
B_CELL_NAIVE_76
46.8
B_CELL_NAIVE_77
43.5
B_CELL_NAIVE_78
41.4
B_CELL_NAIVE_79
39.5
B_CELL_NAIVE_80
39.5
B_CELL_NAIVE_81
37.2
B_CELL_NAIVE_82
34.7
B_CELL_NAIVE_83
33.4
B_CELL_NAIVE_84
32.2
B_CELL_NAIVE_85
30.4
B_CELL_NAIVE_86
28.4
B_CELL_NAIVE_87
27.3
B_CELL_NAIVE_88
27.0
B_CELL_NAIVE_89
26.9
B_CELL_NAIVE_90
24.3
B_CELL_NAIVE_91
15.7
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