A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.8
nTPM
Monaco:
6.0
nTPM
Schmiedel:
13.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.8
HPA sample
nTPM
Classical monocyte nTPM: 0.4
Samples: 6
Max nTPM: 0.9
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.9
P10809_1039
0.2
P10809_1058
0.5
P10809_1080
0.4
P10809_1107
0.3
Intermediate monocyte nTPM: 0.8
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.4
P10809_1004
0.5
P10809_1023
1.2
P10809_1042
0.7
P10809_1061
1.4
P10809_1081
0.4
P10809_1108
0.7
Non-classical monocyte nTPM: 0.8
Samples: 5
Max nTPM: 1.3
Min nTPM: 0.0
P10809_1005
0.9
P10809_1053
1.3
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
1.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.0
Monaco sample
nTPM
Classical monocyte nTPM: 2.4
Samples: 4
Max nTPM: 3.1
Min nTPM: 1.3
RHH5313_R3680
2.2
RHH5221_R3593
3.1
RHH5250_R3622
1.3
RHH5279_R3651
3.1
Intermediate monocyte nTPM: 5.4
Samples: 4
Max nTPM: 8.0
Min nTPM: 3.6
RHH5314_R3681
8.0
RHH5222_R3594
5.3
RHH5251_R3623
4.5
RHH5280_R3652
3.6
Non-classical monocyte nTPM: 6.0
Samples: 4
Max nTPM: 10.2
Min nTPM: 2.5
RHH5315_R3682
10.2
RHH5223_R3595
5.3
RHH5252_R3624
6.1
RHH5281_R3653
2.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.1
Schmiedel sample id
TPM
Classical monocyte TPM: 10.1
Samples: 91
Max TPM: 19.4
Min TPM: 3.8
MONOCYTES_1
19.4
MONOCYTES_2
19.2
MONOCYTES_3
17.6
MONOCYTES_4
16.5
MONOCYTES_5
16.5
MONOCYTES_6
16.0
MONOCYTES_7
16.0
MONOCYTES_8
15.9
MONOCYTES_9
14.4
MONOCYTES_10
14.0
MONOCYTES_11
13.8
MONOCYTES_12
13.8
MONOCYTES_13
13.8
MONOCYTES_14
13.8
MONOCYTES_15
13.7
MONOCYTES_16
13.6
MONOCYTES_17
12.8
MONOCYTES_18
12.6
MONOCYTES_19
12.6
MONOCYTES_20
12.4
MONOCYTES_21
12.2
MONOCYTES_22
12.2
MONOCYTES_23
12.0
MONOCYTES_24
12.0
MONOCYTES_25
12.0
MONOCYTES_26
11.8
MONOCYTES_27
11.8
MONOCYTES_28
11.7
MONOCYTES_29
11.6
MONOCYTES_30
11.6
MONOCYTES_31
11.6
MONOCYTES_32
11.5
MONOCYTES_33
11.1
MONOCYTES_34
11.0
MONOCYTES_35
10.9
MONOCYTES_36
10.9
MONOCYTES_37
10.9
MONOCYTES_38
10.9
MONOCYTES_39
10.7
MONOCYTES_40
10.6
MONOCYTES_41
10.5
MONOCYTES_42
10.4
MONOCYTES_43
10.4
MONOCYTES_44
10.3
MONOCYTES_45
10.0
MONOCYTES_46
9.9
MONOCYTES_47
9.9
MONOCYTES_48
9.8
MONOCYTES_49
9.7
MONOCYTES_50
9.5
MONOCYTES_51
9.5
MONOCYTES_52
9.3
MONOCYTES_53
9.2
MONOCYTES_54
9.0
MONOCYTES_55
8.9
MONOCYTES_56
8.9
MONOCYTES_57
8.9
MONOCYTES_58
8.5
MONOCYTES_59
8.4
MONOCYTES_60
8.4
MONOCYTES_61
8.2
MONOCYTES_62
8.1
MONOCYTES_63
8.1
MONOCYTES_64
8.1
MONOCYTES_65
8.0
MONOCYTES_66
7.9
MONOCYTES_67
7.9
MONOCYTES_68
7.8
MONOCYTES_69
7.7
MONOCYTES_70
7.4
MONOCYTES_71
7.4
MONOCYTES_72
7.2
MONOCYTES_73
7.1
MONOCYTES_74
7.0
MONOCYTES_75
7.0
MONOCYTES_76
6.6
MONOCYTES_77
6.4
MONOCYTES_78
6.3
MONOCYTES_79
6.1
MONOCYTES_80
6.0
MONOCYTES_81
6.0
MONOCYTES_82
6.0
MONOCYTES_83
5.9
MONOCYTES_84
5.8
MONOCYTES_85
5.6
MONOCYTES_86
5.6
MONOCYTES_87
5.5
MONOCYTES_88
5.5
MONOCYTES_89
4.1
MONOCYTES_90
3.9
MONOCYTES_91
3.8
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Non-classical monocyte TPM: 13.1
Samples: 90
Max TPM: 26.5
Min TPM: 3.8
M2_1
26.5
M2_2
26.1
M2_3
23.3
M2_4
23.0
M2_5
22.0
M2_6
21.5
M2_7
21.4
M2_8
21.2
M2_9
20.9
M2_10
20.5
M2_11
20.3
M2_12
19.8
M2_13
19.5
M2_14
19.1
M2_15
18.7
M2_16
18.4
M2_17
17.6
M2_18
17.4
M2_19
17.3
M2_20
16.6
M2_21
16.6
M2_22
16.4
M2_23
16.1
M2_24
15.9
M2_25
15.9
M2_26
15.9
M2_27
15.5
M2_28
15.3
M2_29
15.2
M2_30
15.2
M2_31
15.0
M2_32
14.8
M2_33
14.6
M2_34
14.4
M2_35
14.4
M2_36
14.4
M2_37
14.2
M2_38
13.9
M2_39
13.7
M2_40
13.6
M2_41
13.4
M2_42
13.3
M2_43
12.9
M2_44
12.8
M2_45
12.7
M2_46
12.5
M2_47
12.5
M2_48
12.4
M2_49
12.3
M2_50
12.1
M2_51
11.7
M2_52
11.6
M2_53
11.5
M2_54
11.5
M2_55
11.3
M2_56
11.2
M2_57
10.9
M2_58
10.8
M2_59
10.7
M2_60
10.6
M2_61
10.5
M2_62
10.4
M2_63
10.3
M2_64
10.2
M2_65
10.0
M2_66
9.6
M2_67
9.4
M2_68
9.1
M2_69
9.1
M2_70
9.1
M2_71
9.0
M2_72
8.3
M2_73
7.9
M2_74
7.6
M2_75
7.4
M2_76
6.9
M2_77
6.8
M2_78
6.8
M2_79
6.7
M2_80
6.5
M2_81
6.3
M2_82
6.1
M2_83
6.0
M2_84
5.7
M2_85
5.4
M2_86
5.2
M2_87
5.2
M2_88
5.1
M2_89
4.1
M2_90
3.8
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