A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.3
nTPM
Monaco:
7.1
nTPM
Schmiedel:
19.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.3
HPA sample
nTPM
NK-cell nTPM: 1.3
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.0
P10809_1013
0.7
P10809_1033
1.2
P10809_1052
0.1
P10809_1071
3.2
P10809_1093
0.0
P10809_1103
2.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.1
Monaco sample
nTPM
NK-cell nTPM: 7.1
Samples: 4
Max nTPM: 11.8
Min nTPM: 1.9
RHH5316_R3683
11.8
RHH5224_R3596
5.7
RHH5253_R3625
1.9
RHH5282_R3654
9.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.6
Schmiedel sample id
TPM
NK-cell TPM: 19.6
Samples: 90
Max TPM: 43.9
Min TPM: 5.5
NK_1
43.9
NK_2
33.9
NK_3
32.6
NK_4
31.9
NK_5
30.4
NK_6
30.4
NK_7
30.3
NK_8
29.6
NK_9
29.1
NK_10
27.3
NK_11
27.2
NK_12
26.6
NK_13
26.2
NK_14
25.8
NK_15
25.8
NK_16
25.7
NK_17
25.4
NK_18
25.1
NK_19
24.5
NK_20
24.3
NK_21
24.2
NK_22
23.8
NK_23
23.8
NK_24
23.6
NK_25
23.5
NK_26
23.5
NK_27
23.4
NK_28
23.1
NK_29
22.5
NK_30
22.4
NK_31
22.3
NK_32
22.2
NK_33
22.1
NK_34
21.9
NK_35
21.5
NK_36
21.4
NK_37
21.0
NK_38
20.6
NK_39
20.3
NK_40
20.2
NK_41
20.1
NK_42
20.0
NK_43
20.0
NK_44
19.8
NK_45
19.7
NK_46
19.3
NK_47
19.1
NK_48
19.0
NK_49
18.9
NK_50
18.4
NK_51
18.1
NK_52
18.1
NK_53
18.0
NK_54
17.9
NK_55
17.8
NK_56
17.7
NK_57
17.7
NK_58
17.0
NK_59
16.8
NK_60
16.5
NK_61
16.4
NK_62
16.2
NK_63
15.8
NK_64
15.7
NK_65
15.7
NK_66
15.6
NK_67
15.2
NK_68
15.1
NK_69
14.8
NK_70
14.7
NK_71
14.7
NK_72
14.5
NK_73
13.6
NK_74
13.6
NK_75
13.3
NK_76
12.9
NK_77
12.6
NK_78
12.2
NK_79
12.2
NK_80
11.2
NK_81
10.5
NK_82
9.7
NK_83
9.3
NK_84
9.1
NK_85
8.3
NK_86
8.0
NK_87
7.7
NK_88
6.7
NK_89
6.2
NK_90
5.5
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