A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.7
nTPM
Monaco:
161.0
nTPM
Schmiedel:
16.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.7
HPA sample
nTPM
Memory B-cell nTPM: 35.6
Samples: 6
Max nTPM: 40.3
Min nTPM: 27.9
P10809_1017
27.9
P10809_1025
40.3
P10809_1044
29.2
P10809_1063
36.8
P10809_1092
38.9
P10809_1105
40.2
Naive B-cell nTPM: 37.7
Samples: 6
Max nTPM: 57.6
Min nTPM: 27.2
P10809_1011
27.2
P10809_1029
36.0
P10809_1048
57.6
P10809_1067
29.5
P10809_1091
30.8
P10809_1104
45.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
161.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 107.0
Samples: 4
Max nTPM: 137.8
Min nTPM: 73.6
RHH5310_R3677
121.4
RHH5218_R3590
137.8
RHH5247_R3619
73.6
RHH5276_R3648
95.3
Naive B-cell nTPM: 91.4
Samples: 4
Max nTPM: 153.7
Min nTPM: 52.8
RHH5308_R3675
82.8
RHH5216_R3588
153.7
RHH5245_R3617
52.8
RHH5274_R3646
76.3
Non-switched memory B-cell nTPM: 107.2
Samples: 4
Max nTPM: 136.8
Min nTPM: 63.2
RHH5309_R3676
119.4
RHH5217_R3589
136.8
RHH5246_R3618
109.3
RHH5275_R3647
63.2
Plasmablast nTPM: 161.0
Samples: 4
Max nTPM: 176.2
Min nTPM: 132.2
RHH5312_R3679
163.2
RHH5220_R3592
176.2
RHH5249_R3621
172.3
RHH5278_R3650
132.2
Switched memory B-cell nTPM: 113.6
Samples: 4
Max nTPM: 128.6
Min nTPM: 88.4
RHH5311_R3678
113.8
RHH5219_R3591
128.6
RHH5248_R3620
123.6
RHH5277_R3649
88.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.5
Schmiedel sample id
TPM
Naive B-cell TPM: 16.5
Samples: 91
Max TPM: 33.3
Min TPM: 3.2
B_CELL_NAIVE_1
33.3
B_CELL_NAIVE_2
29.4
B_CELL_NAIVE_3
29.2
B_CELL_NAIVE_4
27.8
B_CELL_NAIVE_5
25.8
B_CELL_NAIVE_6
25.8
B_CELL_NAIVE_7
25.8
B_CELL_NAIVE_8
25.1
B_CELL_NAIVE_9
24.9
B_CELL_NAIVE_10
24.9
B_CELL_NAIVE_11
24.7
B_CELL_NAIVE_12
23.6
B_CELL_NAIVE_13
23.4
B_CELL_NAIVE_14
23.3
B_CELL_NAIVE_15
23.2
B_CELL_NAIVE_16
23.0
B_CELL_NAIVE_17
22.9
B_CELL_NAIVE_18
22.6
B_CELL_NAIVE_19
22.5
B_CELL_NAIVE_20
22.3
B_CELL_NAIVE_21
22.0
B_CELL_NAIVE_22
21.9
B_CELL_NAIVE_23
21.6
B_CELL_NAIVE_24
21.6
B_CELL_NAIVE_25
21.2
B_CELL_NAIVE_26
20.7
B_CELL_NAIVE_27
20.6
B_CELL_NAIVE_28
20.4
B_CELL_NAIVE_29
20.2
B_CELL_NAIVE_30
20.2
B_CELL_NAIVE_31
19.9
B_CELL_NAIVE_32
19.6
B_CELL_NAIVE_33
18.9
B_CELL_NAIVE_34
18.7
B_CELL_NAIVE_35
18.6
B_CELL_NAIVE_36
18.3
B_CELL_NAIVE_37
17.9
B_CELL_NAIVE_38
17.9
B_CELL_NAIVE_39
17.8
B_CELL_NAIVE_40
17.8
B_CELL_NAIVE_41
17.8
B_CELL_NAIVE_42
17.7
B_CELL_NAIVE_43
17.6
B_CELL_NAIVE_44
17.5
B_CELL_NAIVE_45
17.1
B_CELL_NAIVE_46
17.0
B_CELL_NAIVE_47
16.9
B_CELL_NAIVE_48
16.9
B_CELL_NAIVE_49
16.4
B_CELL_NAIVE_50
16.2
B_CELL_NAIVE_51
16.0
B_CELL_NAIVE_52
16.0
B_CELL_NAIVE_53
15.8
B_CELL_NAIVE_54
15.8
B_CELL_NAIVE_55
15.6
B_CELL_NAIVE_56
14.7
B_CELL_NAIVE_57
14.6
B_CELL_NAIVE_58
14.1
B_CELL_NAIVE_59
13.3
B_CELL_NAIVE_60
13.2
B_CELL_NAIVE_61
13.1
B_CELL_NAIVE_62
13.1
B_CELL_NAIVE_63
13.0
B_CELL_NAIVE_64
12.9
B_CELL_NAIVE_65
12.3
B_CELL_NAIVE_66
12.2
B_CELL_NAIVE_67
11.7
B_CELL_NAIVE_68
11.6
B_CELL_NAIVE_69
11.5
B_CELL_NAIVE_70
11.4
B_CELL_NAIVE_71
11.2
B_CELL_NAIVE_72
11.1
B_CELL_NAIVE_73
10.8
B_CELL_NAIVE_74
10.0
B_CELL_NAIVE_75
9.6
B_CELL_NAIVE_76
9.5
B_CELL_NAIVE_77
9.5
B_CELL_NAIVE_78
8.8
B_CELL_NAIVE_79
8.7
B_CELL_NAIVE_80
8.3
B_CELL_NAIVE_81
8.3
B_CELL_NAIVE_82
8.3
B_CELL_NAIVE_83
7.6
B_CELL_NAIVE_84
7.1
B_CELL_NAIVE_85
6.2
B_CELL_NAIVE_86
5.3
B_CELL_NAIVE_87
5.1
B_CELL_NAIVE_88
5.0
B_CELL_NAIVE_89
3.9
B_CELL_NAIVE_90
3.4
B_CELL_NAIVE_91
3.2
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