A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
54.7
nTPM
Monaco:
111.2
nTPM
Schmiedel:
32.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.7
HPA sample
nTPM
NK-cell nTPM: 54.7
Samples: 6
Max nTPM: 75.9
Min nTPM: 26.4
P10809_1013
26.4
P10809_1033
68.2
P10809_1052
54.4
P10809_1071
36.4
P10809_1093
67.1
P10809_1103
75.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
111.2
Monaco sample
nTPM
NK-cell nTPM: 111.2
Samples: 4
Max nTPM: 131.4
Min nTPM: 93.0
RHH5316_R3683
131.4
RHH5224_R3596
118.3
RHH5253_R3625
93.0
RHH5282_R3654
101.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.3
Schmiedel sample id
TPM
NK-cell TPM: 32.3
Samples: 90
Max TPM: 68.2
Min TPM: 9.9
NK_1
68.2
NK_2
59.0
NK_3
58.5
NK_4
55.0
NK_5
54.7
NK_6
54.6
NK_7
53.6
NK_8
53.2
NK_9
52.8
NK_10
52.6
NK_11
51.2
NK_12
49.1
NK_13
48.6
NK_14
48.2
NK_15
47.0
NK_16
44.7
NK_17
44.6
NK_18
43.8
NK_19
43.3
NK_20
43.2
NK_21
42.4
NK_22
41.8
NK_23
41.7
NK_24
41.1
NK_25
39.8
NK_26
39.6
NK_27
39.5
NK_28
39.3
NK_29
39.0
NK_30
38.5
NK_31
38.0
NK_32
37.2
NK_33
37.1
NK_34
36.0
NK_35
35.9
NK_36
35.6
NK_37
34.9
NK_38
34.5
NK_39
34.2
NK_40
33.6
NK_41
33.1
NK_42
31.9
NK_43
31.2
NK_44
30.7
NK_45
30.7
NK_46
30.3
NK_47
30.1
NK_48
30.0
NK_49
29.5
NK_50
29.5
NK_51
29.5
NK_52
29.5
NK_53
29.5
NK_54
28.6
NK_55
26.7
NK_56
26.2
NK_57
25.8
NK_58
25.8
NK_59
25.6
NK_60
24.5
NK_61
23.8
NK_62
23.6
NK_63
23.4
NK_64
23.3
NK_65
23.1
NK_66
22.8
NK_67
22.4
NK_68
22.2
NK_69
21.8
NK_70
21.0
NK_71
21.0
NK_72
20.3
NK_73
20.2
NK_74
20.2
NK_75
19.1
NK_76
18.8
NK_77
18.5
NK_78
18.5
NK_79
16.7
NK_80
16.0
NK_81
15.8
NK_82
15.8
NK_83
14.6
NK_84
14.1
NK_85
11.7
NK_86
10.3
NK_87
10.2
NK_88
10.0
NK_89
10.0
NK_90
9.9
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