A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
837.8
nTPM
Monaco:
574.0
nTPM
Schmiedel:
78.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
837.8
HPA sample
nTPM
Classical monocyte nTPM: 419.4
Samples: 6
Max nTPM: 532.3
Min nTPM: 337.0
P10809_1003
532.3
P10809_1020
412.7
P10809_1039
337.0
P10809_1058
392.8
P10809_1080
375.2
P10809_1107
466.2
Intermediate monocyte nTPM: 541.5
Samples: 6
Max nTPM: 651.9
Min nTPM: 381.6
P10809_1004
478.2
P10809_1023
651.9
P10809_1042
623.8
P10809_1061
538.4
P10809_1081
381.6
P10809_1108
575.2
Non-classical monocyte nTPM: 837.8
Samples: 5
Max nTPM: 1082.2
Min nTPM: 653.7
P10809_1005
756.3
P10809_1053
837.2
P10809_1072
1082.2
P10809_1082
653.7
P10809_1109
859.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
574.0
Monaco sample
nTPM
Classical monocyte nTPM: 495.1
Samples: 4
Max nTPM: 546.9
Min nTPM: 401.6
RHH5313_R3680
508.8
RHH5221_R3593
523.1
RHH5250_R3622
546.9
RHH5279_R3651
401.6
Intermediate monocyte nTPM: 526.0
Samples: 4
Max nTPM: 588.5
Min nTPM: 468.0
RHH5314_R3681
588.5
RHH5222_R3594
468.0
RHH5251_R3623
556.3
RHH5280_R3652
491.2
Non-classical monocyte nTPM: 574.0
Samples: 4
Max nTPM: 665.6
Min nTPM: 481.6
RHH5315_R3682
665.6
RHH5223_R3595
481.6
RHH5252_R3624
605.9
RHH5281_R3653
542.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.3
Schmiedel sample id
TPM
Classical monocyte TPM: 77.6
Samples: 91
Max TPM: 140.2
Min TPM: 34.5
MONOCYTES_1
140.2
MONOCYTES_2
138.8
MONOCYTES_3
118.6
MONOCYTES_4
117.8
MONOCYTES_5
116.4
MONOCYTES_6
115.5
MONOCYTES_7
115.2
MONOCYTES_8
114.5
MONOCYTES_9
113.7
MONOCYTES_10
107.4
MONOCYTES_11
107.2
MONOCYTES_12
106.2
MONOCYTES_13
105.8
MONOCYTES_14
105.3
MONOCYTES_15
105.0
MONOCYTES_16
104.1
MONOCYTES_17
102.5
MONOCYTES_18
101.1
MONOCYTES_19
100.1
MONOCYTES_20
99.7
MONOCYTES_21
99.6
MONOCYTES_22
99.5
MONOCYTES_23
99.4
MONOCYTES_24
99.3
MONOCYTES_25
98.3
MONOCYTES_26
98.3
MONOCYTES_27
97.9
MONOCYTES_28
97.1
MONOCYTES_29
96.2
MONOCYTES_30
94.7
MONOCYTES_31
92.3
MONOCYTES_32
91.3
MONOCYTES_33
87.6
MONOCYTES_34
86.1
MONOCYTES_35
86.1
MONOCYTES_36
81.2
MONOCYTES_37
79.1
MONOCYTES_38
78.9
MONOCYTES_39
78.4
MONOCYTES_40
78.1
MONOCYTES_41
77.6
MONOCYTES_42
75.6
MONOCYTES_43
75.5
MONOCYTES_44
75.4
MONOCYTES_45
73.9
MONOCYTES_46
73.5
MONOCYTES_47
72.8
MONOCYTES_48
72.6
MONOCYTES_49
71.8
MONOCYTES_50
71.7
MONOCYTES_51
71.4
MONOCYTES_52
71.1
MONOCYTES_53
70.9
MONOCYTES_54
70.3
MONOCYTES_55
69.8
MONOCYTES_56
69.0
MONOCYTES_57
67.9
MONOCYTES_58
67.6
MONOCYTES_59
64.1
MONOCYTES_60
62.9
MONOCYTES_61
62.2
MONOCYTES_62
61.5
MONOCYTES_63
60.6
MONOCYTES_64
60.5
MONOCYTES_65
59.8
MONOCYTES_66
59.1
MONOCYTES_67
58.6
MONOCYTES_68
58.1
MONOCYTES_69
57.9
MONOCYTES_70
57.8
MONOCYTES_71
57.4
MONOCYTES_72
57.3
MONOCYTES_73
54.6
MONOCYTES_74
53.9
MONOCYTES_75
53.7
MONOCYTES_76
52.8
MONOCYTES_77
52.6
MONOCYTES_78
52.1
MONOCYTES_79
49.8
MONOCYTES_80
47.6
MONOCYTES_81
47.1
MONOCYTES_82
46.5
MONOCYTES_83
46.3
MONOCYTES_84
44.3
MONOCYTES_85
42.6
MONOCYTES_86
40.3
MONOCYTES_87
40.2
MONOCYTES_88
38.5
MONOCYTES_89
37.6
MONOCYTES_90
35.7
MONOCYTES_91
34.5
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Non-classical monocyte TPM: 78.3
Samples: 90
Max TPM: 141.4
Min TPM: 20.8
M2_1
141.4
M2_2
136.2
M2_3
133.1
M2_4
130.4
M2_5
126.0
M2_6
125.9
M2_7
124.3
M2_8
118.4
M2_9
117.3
M2_10
116.5
M2_11
115.5
M2_12
114.6
M2_13
113.9
M2_14
111.9
M2_15
110.0
M2_16
109.4
M2_17
108.0
M2_18
107.3
M2_19
107.0
M2_20
105.6
M2_21
104.7
M2_22
100.6
M2_23
100.2
M2_24
99.6
M2_25
98.9
M2_26
97.6
M2_27
96.8
M2_28
96.7
M2_29
96.7
M2_30
95.9
M2_31
95.5
M2_32
94.3
M2_33
88.3
M2_34
87.6
M2_35
87.5
M2_36
85.8
M2_37
85.2
M2_38
84.5
M2_39
84.2
M2_40
83.7
M2_41
82.5
M2_42
82.3
M2_43
80.0
M2_44
79.5
M2_45
77.0
M2_46
76.9
M2_47
74.3
M2_48
73.4
M2_49
72.3
M2_50
72.2
M2_51
71.9
M2_52
69.4
M2_53
68.9
M2_54
68.2
M2_55
67.5
M2_56
67.4
M2_57
66.9
M2_58
66.4
M2_59
66.3
M2_60
64.2
M2_61
63.9
M2_62
63.5
M2_63
62.8
M2_64
62.5
M2_65
56.7
M2_66
54.1
M2_67
54.0
M2_68
53.7
M2_69
53.1
M2_70
51.7
M2_71
50.1
M2_72
49.8
M2_73
48.8
M2_74
48.3
M2_75
47.2
M2_76
46.0
M2_77
44.6
M2_78
43.2
M2_79
42.8
M2_80
42.5
M2_81
41.0
M2_82
38.7
M2_83
38.7
M2_84
35.2
M2_85
34.0
M2_86
32.0
M2_87
29.3
M2_88
28.5
M2_89
23.5
M2_90
20.8
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