IL4R
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • IMMUNE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
  • METABOLIC
  • ISOFORM
  • EVOLUTIONARY
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • AI IMPLEMENTATIONS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Tissue
Category
Tau score
Tissue
Category
Tau score
Cluster
Reliability
Region
Niche
Category
Brain region
Category
Tau score
Brain domain
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Cell type
Category
Tau score
Cell type group
Category
Tau score
Single cell
Category
Tau score
Single cell
Category
Tau score
Annotation
Annotation
Annotation
Tissue
Cell type
Enrichment
Cluster
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Regulation
Cancer
Regulation
Cancer
Category
Cancer
Category
Tau score
Correlation
Correlation
Cancer
Category
Tau score
Cluster
Variants
Source
PTM
ipTM
Interacting gene (ensg_id)
Type
Number of interactions
Type
Heterodimer
Subsystem
Isoforms
Specificity
Expression
Species
Ortholog
Type
Species
Tissue
Category
Species
Tau score
Data
Category
Data
Species
Category
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • METABOLIC

  • ISOFORM

  • EVOLUTION

  • IL4R
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:77.1 nTPM
Monaco:697.9 nTPM
Schmiedel:1018.1 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

77.1
HPA sample nTPM
Memory B-cell
nTPM: 25.3
Samples: 6

Max nTPM: 134.7
Min nTPM: 1.9
P10809_1017 7.1
P10809_1025 1.9
P10809_1044 134.7
P10809_1063 2.3
P10809_1092 2.0
P10809_1105 3.9
Naive B-cell
nTPM: 77.1
Samples: 6

Max nTPM: 121.8
Min nTPM: 3.2
P10809_1011 121.8
P10809_1029 70.5
P10809_1048 3.2
P10809_1067 83.9
P10809_1091 82.9
P10809_1104 100.4

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

697.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 152.8
Samples: 4

Max nTPM: 252.5
Min nTPM: 92.6
RHH5310_R3677 92.6
RHH5218_R3590 252.5
RHH5247_R3619 151.1
RHH5276_R3648 115.0
Naive B-cell
nTPM: 697.9
Samples: 4

Max nTPM: 815.6
Min nTPM: 526.1
RHH5308_R3675 645.9
RHH5216_R3588 526.1
RHH5245_R3617 804.0
RHH5274_R3646 815.6
Non-switched memory B-cell
nTPM: 57.5
Samples: 4

Max nTPM: 75.2
Min nTPM: 36.5
RHH5309_R3676 36.5
RHH5217_R3589 48.9
RHH5246_R3618 75.2
RHH5275_R3647 69.4
Plasmablast
nTPM: 5.2
Samples: 4

Max nTPM: 6.4
Min nTPM: 2.7
RHH5312_R3679 6.1
RHH5220_R3592 5.6
RHH5249_R3621 2.7
RHH5278_R3650 6.4
Switched memory B-cell
nTPM: 60.8
Samples: 4

Max nTPM: 94.8
Min nTPM: 37.9
RHH5311_R3678 37.9
RHH5219_R3591 63.0
RHH5248_R3620 94.8
RHH5277_R3649 47.4

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

1018.1
Schmiedel sample id TPM
Naive B-cell
TPM: 1018.1
Samples: 91

Max TPM: 2134.2
Min TPM: 431.5
B_CELL_NAIVE_1 2134.2
B_CELL_NAIVE_2 1778.2
B_CELL_NAIVE_3 1674.3
B_CELL_NAIVE_4 1651.7
B_CELL_NAIVE_5 1559.8
B_CELL_NAIVE_6 1559.6
B_CELL_NAIVE_7 1545.3
B_CELL_NAIVE_8 1464.0
B_CELL_NAIVE_9 1422.2
B_CELL_NAIVE_10 1417.5
B_CELL_NAIVE_11 1389.7
B_CELL_NAIVE_12 1382.8
B_CELL_NAIVE_13 1359.8
B_CELL_NAIVE_14 1353.5
B_CELL_NAIVE_15 1337.5
B_CELL_NAIVE_16 1316.9
B_CELL_NAIVE_17 1314.9
B_CELL_NAIVE_18 1305.1
B_CELL_NAIVE_19 1287.6
B_CELL_NAIVE_20 1286.3
B_CELL_NAIVE_21 1269.8
B_CELL_NAIVE_22 1228.5
B_CELL_NAIVE_23 1221.1
B_CELL_NAIVE_24 1209.5
B_CELL_NAIVE_25 1195.3
B_CELL_NAIVE_26 1169.6
B_CELL_NAIVE_27 1161.9
B_CELL_NAIVE_28 1155.6
B_CELL_NAIVE_29 1127.5
B_CELL_NAIVE_30 1127.3
B_CELL_NAIVE_31 1125.4
B_CELL_NAIVE_32 1123.8
B_CELL_NAIVE_33 1110.9
B_CELL_NAIVE_34 1109.5
B_CELL_NAIVE_35 1108.1
B_CELL_NAIVE_36 1094.8
B_CELL_NAIVE_37 1087.8
B_CELL_NAIVE_38 1083.4
B_CELL_NAIVE_39 1061.5
B_CELL_NAIVE_40 1052.2
B_CELL_NAIVE_41 1040.6
B_CELL_NAIVE_42 1035.3
B_CELL_NAIVE_43 1034.5
B_CELL_NAIVE_44 986.3
B_CELL_NAIVE_45 972.5
B_CELL_NAIVE_46 969.2
B_CELL_NAIVE_47 955.8
B_CELL_NAIVE_48 953.3
B_CELL_NAIVE_49 942.9
B_CELL_NAIVE_50 930.5
B_CELL_NAIVE_51 924.2
B_CELL_NAIVE_52 919.1
B_CELL_NAIVE_53 910.8
B_CELL_NAIVE_54 908.2
B_CELL_NAIVE_55 902.2
B_CELL_NAIVE_56 895.4
B_CELL_NAIVE_57 894.3
B_CELL_NAIVE_58 883.5
B_CELL_NAIVE_59 881.2
B_CELL_NAIVE_60 878.4
B_CELL_NAIVE_61 878.1
B_CELL_NAIVE_62 872.7
B_CELL_NAIVE_63 867.3
B_CELL_NAIVE_64 865.8
B_CELL_NAIVE_65 853.1
B_CELL_NAIVE_66 850.2
B_CELL_NAIVE_67 844.6
B_CELL_NAIVE_68 833.8
B_CELL_NAIVE_69 820.7
B_CELL_NAIVE_70 797.8
B_CELL_NAIVE_71 783.6
B_CELL_NAIVE_72 779.8
B_CELL_NAIVE_73 740.5
B_CELL_NAIVE_74 717.2
B_CELL_NAIVE_75 704.4
B_CELL_NAIVE_76 700.0
B_CELL_NAIVE_77 685.9
B_CELL_NAIVE_78 674.7
B_CELL_NAIVE_79 656.4
B_CELL_NAIVE_80 655.4
B_CELL_NAIVE_81 650.4
B_CELL_NAIVE_82 648.4
B_CELL_NAIVE_83 637.8
B_CELL_NAIVE_84 618.3
B_CELL_NAIVE_85 548.5
B_CELL_NAIVE_86 499.7
B_CELL_NAIVE_87 481.9
B_CELL_NAIVE_88 480.1
B_CELL_NAIVE_89 452.3
B_CELL_NAIVE_90 435.7
B_CELL_NAIVE_91 431.5
Show allShow less

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.