A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
77.1
nTPM
Monaco:
697.9
nTPM
Schmiedel:
1018.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
77.1
HPA sample
nTPM
Memory B-cell nTPM: 25.3
Samples: 6
Max nTPM: 134.7
Min nTPM: 1.9
P10809_1017
7.1
P10809_1025
1.9
P10809_1044
134.7
P10809_1063
2.3
P10809_1092
2.0
P10809_1105
3.9
Naive B-cell nTPM: 77.1
Samples: 6
Max nTPM: 121.8
Min nTPM: 3.2
P10809_1011
121.8
P10809_1029
70.5
P10809_1048
3.2
P10809_1067
83.9
P10809_1091
82.9
P10809_1104
100.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
697.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 152.8
Samples: 4
Max nTPM: 252.5
Min nTPM: 92.6
RHH5310_R3677
92.6
RHH5218_R3590
252.5
RHH5247_R3619
151.1
RHH5276_R3648
115.0
Naive B-cell nTPM: 697.9
Samples: 4
Max nTPM: 815.6
Min nTPM: 526.1
RHH5308_R3675
645.9
RHH5216_R3588
526.1
RHH5245_R3617
804.0
RHH5274_R3646
815.6
Non-switched memory B-cell nTPM: 57.5
Samples: 4
Max nTPM: 75.2
Min nTPM: 36.5
RHH5309_R3676
36.5
RHH5217_R3589
48.9
RHH5246_R3618
75.2
RHH5275_R3647
69.4
Plasmablast nTPM: 5.2
Samples: 4
Max nTPM: 6.4
Min nTPM: 2.7
RHH5312_R3679
6.1
RHH5220_R3592
5.6
RHH5249_R3621
2.7
RHH5278_R3650
6.4
Switched memory B-cell nTPM: 60.8
Samples: 4
Max nTPM: 94.8
Min nTPM: 37.9
RHH5311_R3678
37.9
RHH5219_R3591
63.0
RHH5248_R3620
94.8
RHH5277_R3649
47.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1018.1
Schmiedel sample id
TPM
Naive B-cell TPM: 1018.1
Samples: 91
Max TPM: 2134.2
Min TPM: 431.5
B_CELL_NAIVE_1
2134.2
B_CELL_NAIVE_2
1778.2
B_CELL_NAIVE_3
1674.3
B_CELL_NAIVE_4
1651.7
B_CELL_NAIVE_5
1559.8
B_CELL_NAIVE_6
1559.6
B_CELL_NAIVE_7
1545.3
B_CELL_NAIVE_8
1464.0
B_CELL_NAIVE_9
1422.2
B_CELL_NAIVE_10
1417.5
B_CELL_NAIVE_11
1389.7
B_CELL_NAIVE_12
1382.8
B_CELL_NAIVE_13
1359.8
B_CELL_NAIVE_14
1353.5
B_CELL_NAIVE_15
1337.5
B_CELL_NAIVE_16
1316.9
B_CELL_NAIVE_17
1314.9
B_CELL_NAIVE_18
1305.1
B_CELL_NAIVE_19
1287.6
B_CELL_NAIVE_20
1286.3
B_CELL_NAIVE_21
1269.8
B_CELL_NAIVE_22
1228.5
B_CELL_NAIVE_23
1221.1
B_CELL_NAIVE_24
1209.5
B_CELL_NAIVE_25
1195.3
B_CELL_NAIVE_26
1169.6
B_CELL_NAIVE_27
1161.9
B_CELL_NAIVE_28
1155.6
B_CELL_NAIVE_29
1127.5
B_CELL_NAIVE_30
1127.3
B_CELL_NAIVE_31
1125.4
B_CELL_NAIVE_32
1123.8
B_CELL_NAIVE_33
1110.9
B_CELL_NAIVE_34
1109.5
B_CELL_NAIVE_35
1108.1
B_CELL_NAIVE_36
1094.8
B_CELL_NAIVE_37
1087.8
B_CELL_NAIVE_38
1083.4
B_CELL_NAIVE_39
1061.5
B_CELL_NAIVE_40
1052.2
B_CELL_NAIVE_41
1040.6
B_CELL_NAIVE_42
1035.3
B_CELL_NAIVE_43
1034.5
B_CELL_NAIVE_44
986.3
B_CELL_NAIVE_45
972.5
B_CELL_NAIVE_46
969.2
B_CELL_NAIVE_47
955.8
B_CELL_NAIVE_48
953.3
B_CELL_NAIVE_49
942.9
B_CELL_NAIVE_50
930.5
B_CELL_NAIVE_51
924.2
B_CELL_NAIVE_52
919.1
B_CELL_NAIVE_53
910.8
B_CELL_NAIVE_54
908.2
B_CELL_NAIVE_55
902.2
B_CELL_NAIVE_56
895.4
B_CELL_NAIVE_57
894.3
B_CELL_NAIVE_58
883.5
B_CELL_NAIVE_59
881.2
B_CELL_NAIVE_60
878.4
B_CELL_NAIVE_61
878.1
B_CELL_NAIVE_62
872.7
B_CELL_NAIVE_63
867.3
B_CELL_NAIVE_64
865.8
B_CELL_NAIVE_65
853.1
B_CELL_NAIVE_66
850.2
B_CELL_NAIVE_67
844.6
B_CELL_NAIVE_68
833.8
B_CELL_NAIVE_69
820.7
B_CELL_NAIVE_70
797.8
B_CELL_NAIVE_71
783.6
B_CELL_NAIVE_72
779.8
B_CELL_NAIVE_73
740.5
B_CELL_NAIVE_74
717.2
B_CELL_NAIVE_75
704.4
B_CELL_NAIVE_76
700.0
B_CELL_NAIVE_77
685.9
B_CELL_NAIVE_78
674.7
B_CELL_NAIVE_79
656.4
B_CELL_NAIVE_80
655.4
B_CELL_NAIVE_81
650.4
B_CELL_NAIVE_82
648.4
B_CELL_NAIVE_83
637.8
B_CELL_NAIVE_84
618.3
B_CELL_NAIVE_85
548.5
B_CELL_NAIVE_86
499.7
B_CELL_NAIVE_87
481.9
B_CELL_NAIVE_88
480.1
B_CELL_NAIVE_89
452.3
B_CELL_NAIVE_90
435.7
B_CELL_NAIVE_91
431.5
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