A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.1
nTPM
Monaco:
72.8
nTPM
Schmiedel:
59.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.1
HPA sample
nTPM
Classical monocyte nTPM: 7.1
Samples: 6
Max nTPM: 9.4
Min nTPM: 3.7
P10809_1003
8.7
P10809_1020
5.4
P10809_1039
3.7
P10809_1058
9.4
P10809_1080
6.2
P10809_1107
9.2
Intermediate monocyte nTPM: 3.1
Samples: 6
Max nTPM: 4.9
Min nTPM: 1.8
P10809_1004
3.4
P10809_1023
1.9
P10809_1042
1.8
P10809_1061
3.2
P10809_1081
4.9
P10809_1108
3.1
Non-classical monocyte nTPM: 1.8
Samples: 5
Max nTPM: 2.8
Min nTPM: 0.0
P10809_1005
2.7
P10809_1053
1.4
P10809_1072
0.0
P10809_1082
1.9
P10809_1109
2.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
72.8
Monaco sample
nTPM
Classical monocyte nTPM: 72.8
Samples: 4
Max nTPM: 79.4
Min nTPM: 67.5
RHH5313_R3680
67.5
RHH5221_R3593
79.4
RHH5250_R3622
75.3
RHH5279_R3651
69.1
Intermediate monocyte nTPM: 47.0
Samples: 4
Max nTPM: 56.2
Min nTPM: 33.5
RHH5314_R3681
50.8
RHH5222_R3594
47.3
RHH5251_R3623
33.5
RHH5280_R3652
56.2
Non-classical monocyte nTPM: 27.0
Samples: 4
Max nTPM: 39.7
Min nTPM: 19.7
RHH5315_R3682
20.7
RHH5223_R3595
39.7
RHH5252_R3624
19.7
RHH5281_R3653
27.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.1
Schmiedel sample id
TPM
Classical monocyte TPM: 59.1
Samples: 91
Max TPM: 83.0
Min TPM: 36.4
MONOCYTES_1
83.0
MONOCYTES_2
78.5
MONOCYTES_3
76.6
MONOCYTES_4
76.5
MONOCYTES_5
74.4
MONOCYTES_6
73.2
MONOCYTES_7
72.9
MONOCYTES_8
71.2
MONOCYTES_9
70.4
MONOCYTES_10
70.3
MONOCYTES_11
70.3
MONOCYTES_12
69.2
MONOCYTES_13
67.9
MONOCYTES_14
67.9
MONOCYTES_15
67.1
MONOCYTES_16
67.1
MONOCYTES_17
66.9
MONOCYTES_18
66.3
MONOCYTES_19
66.1
MONOCYTES_20
66.0
MONOCYTES_21
65.9
MONOCYTES_22
65.8
MONOCYTES_23
65.7
MONOCYTES_24
65.0
MONOCYTES_25
64.5
MONOCYTES_26
64.4
MONOCYTES_27
64.2
MONOCYTES_28
64.2
MONOCYTES_29
64.1
MONOCYTES_30
64.0
MONOCYTES_31
64.0
MONOCYTES_32
63.8
MONOCYTES_33
63.6
MONOCYTES_34
63.5
MONOCYTES_35
63.1
MONOCYTES_36
62.3
MONOCYTES_37
62.1
MONOCYTES_38
61.9
MONOCYTES_39
61.6
MONOCYTES_40
61.5
MONOCYTES_41
61.1
MONOCYTES_42
61.0
MONOCYTES_43
60.9
MONOCYTES_44
60.5
MONOCYTES_45
60.0
MONOCYTES_46
59.9
MONOCYTES_47
59.9
MONOCYTES_48
59.6
MONOCYTES_49
59.3
MONOCYTES_50
58.5
MONOCYTES_51
57.9
MONOCYTES_52
57.7
MONOCYTES_53
57.4
MONOCYTES_54
57.3
MONOCYTES_55
57.2
MONOCYTES_56
57.0
MONOCYTES_57
56.0
MONOCYTES_58
55.3
MONOCYTES_59
54.9
MONOCYTES_60
54.9
MONOCYTES_61
54.8
MONOCYTES_62
54.7
MONOCYTES_63
54.4
MONOCYTES_64
54.2
MONOCYTES_65
54.0
MONOCYTES_66
53.9
MONOCYTES_67
53.7
MONOCYTES_68
53.4
MONOCYTES_69
53.4
MONOCYTES_70
52.4
MONOCYTES_71
52.4
MONOCYTES_72
52.1
MONOCYTES_73
51.9
MONOCYTES_74
51.3
MONOCYTES_75
50.9
MONOCYTES_76
50.2
MONOCYTES_77
49.8
MONOCYTES_78
49.6
MONOCYTES_79
48.9
MONOCYTES_80
48.8
MONOCYTES_81
48.3
MONOCYTES_82
46.1
MONOCYTES_83
45.9
MONOCYTES_84
45.5
MONOCYTES_85
43.8
MONOCYTES_86
43.6
MONOCYTES_87
43.0
MONOCYTES_88
42.8
MONOCYTES_89
40.3
MONOCYTES_90
37.8
MONOCYTES_91
36.4
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Non-classical monocyte TPM: 24.7
Samples: 90
Max TPM: 52.5
Min TPM: 10.3
M2_1
52.5
M2_2
42.8
M2_3
42.6
M2_4
37.9
M2_5
35.0
M2_6
33.9
M2_7
32.9
M2_8
32.7
M2_9
32.4
M2_10
32.1
M2_11
32.0
M2_12
31.8
M2_13
31.7
M2_14
31.7
M2_15
31.2
M2_16
30.7
M2_17
30.5
M2_18
30.2
M2_19
30.1
M2_20
30.0
M2_21
30.0
M2_22
29.7
M2_23
29.6
M2_24
29.5
M2_25
29.1
M2_26
28.8
M2_27
28.7
M2_28
28.5
M2_29
28.1
M2_30
28.0
M2_31
27.9
M2_32
27.8
M2_33
27.7
M2_34
27.5
M2_35
27.5
M2_36
27.3
M2_37
27.0
M2_38
26.5
M2_39
26.4
M2_40
26.3
M2_41
25.9
M2_42
25.8
M2_43
25.2
M2_44
25.1
M2_45
24.7
M2_46
24.5
M2_47
24.4
M2_48
24.2
M2_49
24.2
M2_50
24.0
M2_51
23.9
M2_52
23.8
M2_53
23.7
M2_54
23.6
M2_55
23.3
M2_56
23.1
M2_57
22.9
M2_58
22.8
M2_59
22.8
M2_60
22.7
M2_61
21.8
M2_62
21.5
M2_63
21.3
M2_64
21.3
M2_65
20.6
M2_66
20.5
M2_67
20.3
M2_68
19.6
M2_69
19.5
M2_70
19.1
M2_71
19.0
M2_72
18.7
M2_73
17.5
M2_74
17.2
M2_75
16.6
M2_76
16.4
M2_77
16.2
M2_78
15.2
M2_79
15.1
M2_80
14.8
M2_81
13.6
M2_82
13.4
M2_83
13.1
M2_84
13.0
M2_85
12.4
M2_86
11.9
M2_87
11.6
M2_88
11.2
M2_89
10.5
M2_90
10.3
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