A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.4
nTPM
Monaco:
43.7
nTPM
Schmiedel:
45.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.4
HPA sample
nTPM
NK-cell nTPM: 8.4
Samples: 6
Max nTPM: 12.7
Min nTPM: 4.5
P10809_1013
8.3
P10809_1033
4.5
P10809_1052
10.1
P10809_1071
10.0
P10809_1093
12.7
P10809_1103
4.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.7
Monaco sample
nTPM
NK-cell nTPM: 43.7
Samples: 4
Max nTPM: 50.7
Min nTPM: 31.3
RHH5316_R3683
31.3
RHH5224_R3596
45.7
RHH5253_R3625
50.7
RHH5282_R3654
47.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.3
Schmiedel sample id
TPM
NK-cell TPM: 45.3
Samples: 90
Max TPM: 65.6
Min TPM: 20.8
NK_1
65.6
NK_2
65.2
NK_3
64.5
NK_4
64.2
NK_5
64.0
NK_6
63.8
NK_7
63.6
NK_8
63.6
NK_9
63.4
NK_10
62.4
NK_11
60.1
NK_12
59.2
NK_13
58.5
NK_14
58.3
NK_15
58.2
NK_16
57.9
NK_17
57.5
NK_18
57.4
NK_19
56.2
NK_20
55.0
NK_21
54.6
NK_22
54.4
NK_23
54.2
NK_24
53.3
NK_25
53.2
NK_26
52.6
NK_27
52.5
NK_28
52.5
NK_29
52.1
NK_30
52.0
NK_31
51.9
NK_32
51.6
NK_33
51.3
NK_34
50.8
NK_35
50.4
NK_36
50.1
NK_37
50.1
NK_38
50.0
NK_39
48.0
NK_40
47.8
NK_41
47.0
NK_42
46.2
NK_43
45.9
NK_44
45.7
NK_45
45.4
NK_46
45.0
NK_47
44.5
NK_48
44.4
NK_49
44.2
NK_50
44.1
NK_51
43.0
NK_52
42.9
NK_53
41.6
NK_54
41.1
NK_55
40.8
NK_56
40.7
NK_57
40.6
NK_58
40.2
NK_59
39.4
NK_60
39.2
NK_61
38.6
NK_62
38.6
NK_63
38.4
NK_64
38.1
NK_65
38.1
NK_66
38.0
NK_67
37.6
NK_68
37.6
NK_69
37.3
NK_70
37.1
NK_71
35.1
NK_72
34.4
NK_73
33.6
NK_74
33.1
NK_75
32.9
NK_76
32.9
NK_77
31.9
NK_78
30.4
NK_79
30.3
NK_80
30.3
NK_81
29.4
NK_82
28.9
NK_83
28.8
NK_84
28.4
NK_85
28.1
NK_86
26.0
NK_87
24.0
NK_88
23.2
NK_89
22.4
NK_90
20.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
