A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
37.4
nTPM
Monaco:
100.9
nTPM
Schmiedel:
93.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.4
HPA sample
nTPM
Memory B-cell nTPM: 32.7
Samples: 6
Max nTPM: 41.7
Min nTPM: 11.9
P10809_1017
40.9
P10809_1025
38.0
P10809_1044
11.9
P10809_1063
33.2
P10809_1092
41.7
P10809_1105
30.5
Naive B-cell nTPM: 37.4
Samples: 6
Max nTPM: 45.5
Min nTPM: 30.7
P10809_1011
30.7
P10809_1029
34.1
P10809_1048
45.5
P10809_1067
33.9
P10809_1091
41.6
P10809_1104
38.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
100.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 100.9
Samples: 4
Max nTPM: 121.7
Min nTPM: 87.7
RHH5310_R3677
121.7
RHH5218_R3590
87.7
RHH5247_R3619
89.6
RHH5276_R3648
104.5
Naive B-cell nTPM: 90.9
Samples: 4
Max nTPM: 135.4
Min nTPM: 71.6
RHH5308_R3675
71.6
RHH5216_R3588
135.4
RHH5245_R3617
81.6
RHH5274_R3646
74.9
Non-switched memory B-cell nTPM: 97.8
Samples: 4
Max nTPM: 105.8
Min nTPM: 87.4
RHH5309_R3676
102.4
RHH5217_R3589
105.8
RHH5246_R3618
95.6
RHH5275_R3647
87.4
Plasmablast nTPM: 97.7
Samples: 4
Max nTPM: 108.0
Min nTPM: 90.8
RHH5312_R3679
108.0
RHH5220_R3592
91.1
RHH5249_R3621
90.8
RHH5278_R3650
100.9
Switched memory B-cell nTPM: 98.9
Samples: 4
Max nTPM: 118.6
Min nTPM: 86.6
RHH5311_R3678
118.6
RHH5219_R3591
87.9
RHH5248_R3620
102.3
RHH5277_R3649
86.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
93.3
Schmiedel sample id
TPM
Naive B-cell TPM: 93.3
Samples: 91
Max TPM: 140.1
Min TPM: 40.4
B_CELL_NAIVE_1
140.1
B_CELL_NAIVE_2
130.3
B_CELL_NAIVE_3
129.9
B_CELL_NAIVE_4
126.9
B_CELL_NAIVE_5
124.5
B_CELL_NAIVE_6
122.2
B_CELL_NAIVE_7
121.8
B_CELL_NAIVE_8
121.7
B_CELL_NAIVE_9
121.1
B_CELL_NAIVE_10
120.8
B_CELL_NAIVE_11
120.2
B_CELL_NAIVE_12
118.5
B_CELL_NAIVE_13
118.1
B_CELL_NAIVE_14
116.8
B_CELL_NAIVE_15
116.1
B_CELL_NAIVE_16
115.5
B_CELL_NAIVE_17
114.3
B_CELL_NAIVE_18
114.2
B_CELL_NAIVE_19
113.9
B_CELL_NAIVE_20
113.1
B_CELL_NAIVE_21
112.5
B_CELL_NAIVE_22
111.5
B_CELL_NAIVE_23
111.3
B_CELL_NAIVE_24
111.2
B_CELL_NAIVE_25
110.2
B_CELL_NAIVE_26
109.5
B_CELL_NAIVE_27
109.3
B_CELL_NAIVE_28
108.6
B_CELL_NAIVE_29
107.6
B_CELL_NAIVE_30
107.5
B_CELL_NAIVE_31
105.7
B_CELL_NAIVE_32
105.6
B_CELL_NAIVE_33
105.5
B_CELL_NAIVE_34
103.2
B_CELL_NAIVE_35
103.1
B_CELL_NAIVE_36
102.7
B_CELL_NAIVE_37
102.0
B_CELL_NAIVE_38
101.6
B_CELL_NAIVE_39
101.5
B_CELL_NAIVE_40
101.4
B_CELL_NAIVE_41
101.2
B_CELL_NAIVE_42
99.6
B_CELL_NAIVE_43
99.4
B_CELL_NAIVE_44
99.1
B_CELL_NAIVE_45
98.9
B_CELL_NAIVE_46
97.8
B_CELL_NAIVE_47
97.7
B_CELL_NAIVE_48
96.3
B_CELL_NAIVE_49
95.3
B_CELL_NAIVE_50
94.1
B_CELL_NAIVE_51
93.1
B_CELL_NAIVE_52
91.3
B_CELL_NAIVE_53
90.5
B_CELL_NAIVE_54
90.4
B_CELL_NAIVE_55
89.5
B_CELL_NAIVE_56
89.4
B_CELL_NAIVE_57
88.0
B_CELL_NAIVE_58
88.0
B_CELL_NAIVE_59
86.7
B_CELL_NAIVE_60
85.9
B_CELL_NAIVE_61
85.5
B_CELL_NAIVE_62
85.0
B_CELL_NAIVE_63
83.7
B_CELL_NAIVE_64
83.0
B_CELL_NAIVE_65
83.0
B_CELL_NAIVE_66
81.9
B_CELL_NAIVE_67
81.2
B_CELL_NAIVE_68
79.0
B_CELL_NAIVE_69
78.8
B_CELL_NAIVE_70
77.0
B_CELL_NAIVE_71
76.9
B_CELL_NAIVE_72
72.8
B_CELL_NAIVE_73
71.4
B_CELL_NAIVE_74
71.3
B_CELL_NAIVE_75
69.4
B_CELL_NAIVE_76
68.6
B_CELL_NAIVE_77
68.5
B_CELL_NAIVE_78
64.5
B_CELL_NAIVE_79
63.4
B_CELL_NAIVE_80
61.8
B_CELL_NAIVE_81
59.9
B_CELL_NAIVE_82
58.9
B_CELL_NAIVE_83
58.9
B_CELL_NAIVE_84
55.5
B_CELL_NAIVE_85
53.6
B_CELL_NAIVE_86
53.4
B_CELL_NAIVE_87
46.5
B_CELL_NAIVE_88
44.2
B_CELL_NAIVE_89
43.7
B_CELL_NAIVE_90
42.3
B_CELL_NAIVE_91
40.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
