A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
68.2
nTPM
Monaco:
168.2
nTPM
Schmiedel:
108.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
68.2
HPA sample
nTPM
Classical monocyte nTPM: 47.9
Samples: 6
Max nTPM: 62.9
Min nTPM: 36.5
P10809_1003
62.9
P10809_1020
46.1
P10809_1039
50.0
P10809_1058
36.5
P10809_1080
43.5
P10809_1107
48.2
Intermediate monocyte nTPM: 57.8
Samples: 6
Max nTPM: 70.1
Min nTPM: 39.7
P10809_1004
70.1
P10809_1023
46.5
P10809_1042
69.4
P10809_1061
69.9
P10809_1081
39.7
P10809_1108
51.4
Non-classical monocyte nTPM: 68.2
Samples: 5
Max nTPM: 112.3
Min nTPM: 37.5
P10809_1005
65.8
P10809_1053
66.4
P10809_1072
112.3
P10809_1082
37.5
P10809_1109
59.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
168.2
Monaco sample
nTPM
Classical monocyte nTPM: 130.9
Samples: 4
Max nTPM: 156.5
Min nTPM: 108.8
RHH5313_R3680
138.3
RHH5221_R3593
156.5
RHH5250_R3622
108.8
RHH5279_R3651
120.1
Intermediate monocyte nTPM: 135.4
Samples: 4
Max nTPM: 150.9
Min nTPM: 121.0
RHH5314_R3681
122.9
RHH5222_R3594
146.9
RHH5251_R3623
121.0
RHH5280_R3652
150.9
Non-classical monocyte nTPM: 168.2
Samples: 4
Max nTPM: 217.0
Min nTPM: 150.9
RHH5315_R3682
150.9
RHH5223_R3595
217.0
RHH5252_R3624
150.9
RHH5281_R3653
153.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
108.2
Schmiedel sample id
TPM
Classical monocyte TPM: 104.5
Samples: 91
Max TPM: 144.4
Min TPM: 67.9
MONOCYTES_1
144.4
MONOCYTES_2
143.4
MONOCYTES_3
142.5
MONOCYTES_4
139.7
MONOCYTES_5
137.6
MONOCYTES_6
137.3
MONOCYTES_7
135.7
MONOCYTES_8
134.8
MONOCYTES_9
130.5
MONOCYTES_10
130.1
MONOCYTES_11
129.1
MONOCYTES_12
127.4
MONOCYTES_13
124.3
MONOCYTES_14
123.4
MONOCYTES_15
123.3
MONOCYTES_16
122.9
MONOCYTES_17
121.5
MONOCYTES_18
120.6
MONOCYTES_19
120.5
MONOCYTES_20
119.8
MONOCYTES_21
119.5
MONOCYTES_22
119.3
MONOCYTES_23
118.9
MONOCYTES_24
118.6
MONOCYTES_25
118.0
MONOCYTES_26
117.4
MONOCYTES_27
117.2
MONOCYTES_28
116.8
MONOCYTES_29
116.5
MONOCYTES_30
116.1
MONOCYTES_31
115.3
MONOCYTES_32
115.0
MONOCYTES_33
114.9
MONOCYTES_34
114.3
MONOCYTES_35
114.1
MONOCYTES_36
113.5
MONOCYTES_37
112.5
MONOCYTES_38
112.5
MONOCYTES_39
110.3
MONOCYTES_40
108.6
MONOCYTES_41
108.2
MONOCYTES_42
108.0
MONOCYTES_43
107.2
MONOCYTES_44
105.8
MONOCYTES_45
104.6
MONOCYTES_46
104.5
MONOCYTES_47
104.3
MONOCYTES_48
104.1
MONOCYTES_49
102.5
MONOCYTES_50
101.2
MONOCYTES_51
100.6
MONOCYTES_52
99.6
MONOCYTES_53
98.9
MONOCYTES_54
98.9
MONOCYTES_55
98.5
MONOCYTES_56
98.3
MONOCYTES_57
96.8
MONOCYTES_58
96.4
MONOCYTES_59
96.4
MONOCYTES_60
96.3
MONOCYTES_61
96.0
MONOCYTES_62
96.0
MONOCYTES_63
95.9
MONOCYTES_64
95.2
MONOCYTES_65
92.6
MONOCYTES_66
91.9
MONOCYTES_67
90.2
MONOCYTES_68
89.4
MONOCYTES_69
88.2
MONOCYTES_70
87.9
MONOCYTES_71
87.6
MONOCYTES_72
87.6
MONOCYTES_73
85.9
MONOCYTES_74
85.9
MONOCYTES_75
85.1
MONOCYTES_76
85.0
MONOCYTES_77
81.5
MONOCYTES_78
81.4
MONOCYTES_79
78.5
MONOCYTES_80
76.8
MONOCYTES_81
75.5
MONOCYTES_82
75.1
MONOCYTES_83
75.0
MONOCYTES_84
73.7
MONOCYTES_85
73.5
MONOCYTES_86
73.2
MONOCYTES_87
72.4
MONOCYTES_88
72.3
MONOCYTES_89
72.3
MONOCYTES_90
70.3
MONOCYTES_91
67.9
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Non-classical monocyte TPM: 108.2
Samples: 90
Max TPM: 154.3
Min TPM: 46.7
M2_1
154.3
M2_2
151.3
M2_3
150.6
M2_4
147.1
M2_5
144.0
M2_6
142.1
M2_7
140.8
M2_8
137.2
M2_9
136.6
M2_10
136.5
M2_11
136.1
M2_12
134.8
M2_13
134.7
M2_14
134.5
M2_15
134.5
M2_16
133.8
M2_17
133.7
M2_18
133.4
M2_19
133.4
M2_20
133.2
M2_21
131.9
M2_22
131.5
M2_23
131.1
M2_24
130.9
M2_25
130.0
M2_26
129.9
M2_27
128.5
M2_28
127.9
M2_29
127.9
M2_30
126.1
M2_31
125.0
M2_32
123.5
M2_33
123.4
M2_34
123.4
M2_35
122.2
M2_36
122.0
M2_37
119.7
M2_38
118.9
M2_39
118.5
M2_40
118.1
M2_41
118.0
M2_42
115.9
M2_43
115.6
M2_44
115.5
M2_45
115.5
M2_46
114.1
M2_47
113.5
M2_48
113.1
M2_49
112.4
M2_50
109.9
M2_51
109.4
M2_52
108.9
M2_53
107.8
M2_54
105.5
M2_55
101.7
M2_56
99.3
M2_57
99.1
M2_58
97.2
M2_59
97.0
M2_60
95.9
M2_61
94.5
M2_62
93.9
M2_63
93.3
M2_64
92.7
M2_65
92.1
M2_66
87.3
M2_67
86.8
M2_68
86.3
M2_69
85.7
M2_70
85.6
M2_71
84.9
M2_72
80.5
M2_73
80.3
M2_74
80.1
M2_75
79.9
M2_76
78.7
M2_77
76.2
M2_78
72.6
M2_79
72.5
M2_80
71.9
M2_81
71.3
M2_82
68.6
M2_83
68.3
M2_84
62.3
M2_85
59.7
M2_86
59.1
M2_87
59.0
M2_88
57.0
M2_89
50.5
M2_90
46.7
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