A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
38.8
nTPM
Monaco:
142.4
nTPM
Schmiedel:
137.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.8
HPA sample
nTPM
NK-cell nTPM: 38.8
Samples: 6
Max nTPM: 51.5
Min nTPM: 23.3
P10809_1013
23.3
P10809_1033
40.2
P10809_1052
46.3
P10809_1071
34.4
P10809_1093
36.9
P10809_1103
51.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
142.4
Monaco sample
nTPM
NK-cell nTPM: 142.4
Samples: 4
Max nTPM: 160.5
Min nTPM: 129.3
RHH5316_R3683
129.3
RHH5224_R3596
160.5
RHH5253_R3625
147.2
RHH5282_R3654
132.6
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
137.0
Schmiedel sample id
TPM
NK-cell TPM: 137.0
Samples: 90
Max TPM: 212.3
Min TPM: 65.6
NK_1
212.3
NK_2
189.1
NK_3
187.1
NK_4
184.7
NK_5
184.6
NK_6
184.3
NK_7
182.4
NK_8
181.5
NK_9
179.2
NK_10
178.8
NK_11
176.8
NK_12
175.2
NK_13
172.7
NK_14
172.7
NK_15
169.4
NK_16
169.3
NK_17
166.2
NK_18
163.9
NK_19
162.8
NK_20
160.3
NK_21
158.2
NK_22
157.8
NK_23
157.7
NK_24
156.6
NK_25
155.6
NK_26
154.9
NK_27
154.0
NK_28
152.4
NK_29
152.4
NK_30
150.7
NK_31
148.9
NK_32
148.6
NK_33
147.9
NK_34
147.8
NK_35
146.7
NK_36
146.3
NK_37
146.3
NK_38
145.7
NK_39
145.5
NK_40
143.5
NK_41
143.2
NK_42
142.6
NK_43
141.7
NK_44
140.6
NK_45
140.5
NK_46
139.2
NK_47
138.1
NK_48
137.3
NK_49
136.7
NK_50
135.9
NK_51
135.4
NK_52
135.3
NK_53
133.3
NK_54
132.9
NK_55
131.7
NK_56
129.1
NK_57
127.7
NK_58
126.4
NK_59
126.3
NK_60
124.9
NK_61
124.4
NK_62
124.0
NK_63
122.8
NK_64
121.7
NK_65
120.8
NK_66
119.6
NK_67
117.4
NK_68
113.1
NK_69
113.1
NK_70
112.8
NK_71
110.8
NK_72
110.8
NK_73
108.9
NK_74
108.2
NK_75
107.6
NK_76
106.0
NK_77
98.4
NK_78
97.7
NK_79
97.6
NK_80
93.1
NK_81
93.0
NK_82
92.9
NK_83
92.9
NK_84
91.6
NK_85
83.3
NK_86
81.3
NK_87
78.4
NK_88
77.0
NK_89
73.9
NK_90
65.6
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