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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:94.4 nTPM
HPA Brain:116.2 nTPM
GTEx:94.4 nTPM
FANTOM5:110.3 Scaled Tags Per Million
Pig:92.1 nTPM
Mouse:187.9 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.2
Sample id Sample description nTPM
Amygdala
nTPM: 108.1
2695 Female, age 67, right hemisphere 117.7
2514 Male, age 75, right hemisphere 114.6
1987 Female, age 91, left hemisphere 112.9
2517 Female, age 94, left hemisphere 98.1
2814 Male, age 76, right hemisphere 97.4
Basal amygdala
nTPM: 116.2
2243 Female, age 91, right hemisphere 121.9
2609 Male, age 75, right hemisphere 121.8
2827 Female, age 67, right hemisphere 121.2
2110 Male, age 80, left hemisphere 114.5
2685 Female, age 94, left hemisphere 111.9
1955 Male, age 76, both hemispheres 105.7
Central amygdala
nTPM: 112.5
2826 Female, age 94, left hemisphere 125.3
2239 Male, age 80, left hemisphere 118.3
2515 Male, age 75, right hemisphere 117.3
2701 Female, age 91, right hemisphere 110.7
1905 Male, age 76, both hemispheres 90.9
Corticomedial amygdala
nTPM: 113.0
2428 Male, age 75, right hemisphere 124.2
2829 Male, age 80, left hemisphere 117.7
2240 Male, age 76, both hemispheres 114.0
2242 Female, age 91, right hemisphere 109.9
2429 Female, age 94, left hemisphere 107.6
2535 Female, age 67, right hemisphere 104.2
Lateral amygdala
nTPM: 115.3
2830 Female, age 67, right hemisphere 137.1
2516 Male, age 75, right hemisphere 123.9
2256 Male, age 80, left hemisphere 115.9
2534 Female, age 94, left hemisphere 114.2
2255 Female, age 91, right hemisphere 103.4
1883 Male, age 76, both hemispheres 97.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 94.4
Samples: 181

Max nTPM: 216.5
Min nTPM: 59.3
Std nTPM: 20.0
Median nTPM: 92.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 216.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 150.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 150.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 149.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 138.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 135.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 135.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 130.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 129.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 128.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 125.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 124.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 124.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 124.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 123.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 121.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 121.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 119.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 118.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 116.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 115.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 113.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 113.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 113.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 112.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 112.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 112.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 112.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 110.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 110.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 110.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 109.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 108.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 108.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 107.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 107.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 107.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 107.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 106.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 106.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 106.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 105.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 105.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 105.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 104.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 104.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 104.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 103.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 103.2
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 102.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 102.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 101.7
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 101.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 101.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 100.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 100.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 100.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 100.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 100.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 99.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 99.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 99.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 99.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 99.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 98.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 98.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 97.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 97.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 97.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 97.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 96.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 96.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 95.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 95.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 95.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 95.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 95.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 94.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 94.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 94.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 94.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 94.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 94.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 93.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 93.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 93.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 93.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 93.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 93.0
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 92.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 92.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 92.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 91.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 91.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 91.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 91.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 91.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 90.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 90.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 90.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 89.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 89.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 88.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 88.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 88.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 87.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 87.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 87.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 87.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 87.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 87.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 87.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 86.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 86.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 86.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 86.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 86.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 85.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 85.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 84.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 83.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 83.9
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 83.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 83.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 83.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 83.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 83.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 83.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 82.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 82.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 82.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 82.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 82.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 81.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 81.3
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 80.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 80.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 80.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 80.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 79.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 79.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 78.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 78.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 78.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 78.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 77.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 77.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 76.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 76.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 76.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 75.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 75.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 75.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 75.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 75.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 75.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 74.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 74.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 74.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 74.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 74.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 74.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 74.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 73.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 72.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 71.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 70.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 70.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 70.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 69.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 69.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 69.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 69.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 68.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 67.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 67.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 65.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 63.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 62.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 61.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 59.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

110.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 110.3
FF:10151-102I7 76 years, female 110.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.1
Pig sample Sample description nTPM
Amygdala
nTPM: 92.1
Samples: 4

Max nTPM: 101.5
Min nTPM: 85.8
Sample A Female 101.5
Sample B Female 93.2
Sample C Male 87.8
Sample D Male 85.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 187.9
Samples: 4

Max nTPM: 202.8
Min nTPM: 179.6
Sample A Male 179.6
Sample B Male 187.6
Sample C Female 202.8
Sample D Female 181.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
73927607 Antisense, RP_051219_01_E05, Mouse strain C57BL/6J (56 days, male) 0.0

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