On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
92.5
nTPM
HPA Brain:
124.2
nTPM
GTEx:
92.5
nTPM
FANTOM5:
80.3
Scaled Tags Per Million
Mouse:
97.5
nTPM
Rat:
93.7
nTPM
Pig:
65.2
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
2685
Sample
Intensity
Spinal cord_01
2342
Spinal cord_02
1517
Spinal cord_03
4353
Spinal cord_04
4166
Spinal cord_05
2982
Spinal cord_06
1770
Spinal cord_07
2997
Spinal cord_08
2388
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
124.2
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 120.6
2193
Male, age 75, both hemispheres
129.0
2819
Male, age 47, both hemispheres
126.4
2818
Female, age 79, both hemispheres
121.5
2734
Male, age 80, both hemispheres
105.6
Cervical spinal cord, central gray nTPM: 113.7
2048
Male, age 55, midline
130.1
1981
Female, age 72, midline
115.1
2565
Male, age 75, midline
109.7
2194
Female, age 79, both hemispheres
107.6
2816
Male, age 47, midline
105.9
Cervical spinal cord, dorsal horn nTPM: 113.8
2296
Male, age 66, both hemispheres
123.6
2173
Female, age 72, unknown
119.3
2297
Male, age 75, both hemispheres
114.8
2069
Male, age 47, both hemispheres
114.4
2721
Male, age 90, both hemispheres
109.6
1877
Male, age 55, unknown
100.8
Cervical spinal cord, ventral horn nTPM: 124.2
2480
Male, age 75, both hemispheres
146.4
2809
Male, age 90, both hemispheres
135.3
2295
Male, age 66, both hemispheres
131.7
2098
Female, age 72, unknown
124.5
2068
Male, age 55, unknown
107.5
2820
Female, age 79, both hemispheres
100.1
Dorsal funiculus (white matter) nTPM: 116.7
2064
Female, age 79, both hemispheres
124.6
2817
Male, age 47, both hemispheres
117.8
2128
Male, age 75, both hemispheres
117.1
2810
Male, age 90, both hemispheres
115.5
2812
Male, age 66, both hemispheres
108.6
Lateral funiculus (white matter) nTPM: 117.5
2094
Female, age 79, both hemispheres
128.3
2192
Male, age 75, both hemispheres
121.9
2099
Male, age 90, both hemispheres
111.6
2294
Male, age 66, both hemispheres
108.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.5
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 92.5
Samples: 204
Max nTPM: 231.6
Min nTPM: 52.0
Std nTPM: 26.6
Median nTPM: 87.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
231.6
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
208.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
181.9
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
177.0
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
172.4
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
156.8
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
151.5
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
146.3
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
142.3
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
141.4
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
141.0
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
138.1
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
136.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
133.4
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
132.9
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
132.0
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
131.9
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
131.0
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
126.6
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
125.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
124.8
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
122.7
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
122.3
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
122.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
121.7
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
120.4
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
119.4
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
115.1
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
114.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
114.0
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
113.9
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
113.8
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
113.1
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
113.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
112.3
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
112.0
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
111.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
110.0
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
109.9
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
109.6
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
108.7
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
108.6
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
108.4
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
107.9
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
106.7
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
105.8
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
105.2
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
104.7
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
104.6
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
104.1
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
103.8
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
103.7
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
103.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
102.7
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
102.5
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
102.3
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
102.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
101.6
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
101.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
100.8
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
100.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
99.7
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
99.4
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
99.2
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
99.0
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
98.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
98.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
98.0
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
97.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
97.5
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
97.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
97.2
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
97.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
97.0
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
96.9
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
96.8
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
96.3
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
96.2
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
96.0
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
95.3
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
94.7
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
93.1
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
92.2
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
92.1
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
91.3
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
91.2
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
91.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
91.0
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
90.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
89.8
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
89.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
89.0
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
89.0
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
89.0
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
89.0
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
88.7
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
88.6
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
88.6
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
88.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
87.8
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
87.1
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
87.0
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
86.9
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
86.7
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
86.1
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
85.8
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
85.8
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
85.3
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
85.0
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
84.9
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
84.8
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
84.6
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
84.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
84.3
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
83.6
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
83.1
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
83.0
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
82.3
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
82.2
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
82.2
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
82.1
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
81.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
81.3
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
81.2
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
81.1
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
80.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
80.5
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
80.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
79.9
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
78.8
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
78.6
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
78.3
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
78.1
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
77.9
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
77.6
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
77.5
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
77.2
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
77.1
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
76.8
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
76.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
76.7
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
76.5
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
76.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
76.1
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
75.7
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
75.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
75.5
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
75.1
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
75.0
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
74.9
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
74.8
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
74.5
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
74.2
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
73.8
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
73.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
73.8
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
73.5
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
73.5
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
73.4
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
72.7
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
72.6
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
72.3
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
72.0
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
72.0
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
71.7
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
71.4
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
71.4
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
71.0
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
70.5
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
70.4
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
70.3
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
70.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
70.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
69.8
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
69.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
68.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
68.9
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
68.7
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
68.7
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
68.7
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
68.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
68.1
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
68.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
67.8
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
67.1
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
66.6
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
66.5
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
66.4
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
65.1
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
65.0
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
64.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
63.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
62.4
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
62.1
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
61.8
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
59.4
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
58.9
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
58.2
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
58.0
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
57.3
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
56.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
55.0
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
53.1
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
52.0
Show allShow less
SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
65.2
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 62.7
Samples: 4
Max nTPM: 69.1
Min nTPM: 56.5
Sample A
Female
68.2
Sample B
Female
56.5
Sample C
Male
57.0
Sample D
Male
69.1
Ventral spinal cord nTPM: 65.2
Samples: 4
Max nTPM: 66.7
Min nTPM: 63.2
Sample A
Female
65.3
Sample B
Female
66.7
Sample C
Male
63.2
Sample D
Male
65.5
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
97.5
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 97.6
Samples: 4
Max nTPM: 108.9
Min nTPM: 89.4
Sample A
108.9
Sample B
89.4
Sample C
92.6
Sample D
99.3
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.7
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 93.7
Samples: 4
Max nTPM: 100.1
Min nTPM: 84.4
Sample A
96.0
Sample A
94.2
Sample A
100.1
Sample A
84.4
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
