A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.5
nTPM
Monaco:
25.7
nTPM
Schmiedel:
51.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.5
HPA sample
nTPM
Memory B-cell nTPM: 5.5
Samples: 6
Max nTPM: 10.1
Min nTPM: 1.6
P10809_1017
4.2
P10809_1025
4.8
P10809_1044
1.6
P10809_1063
7.8
P10809_1092
10.1
P10809_1105
4.3
Naive B-cell nTPM: 4.4
Samples: 6
Max nTPM: 7.4
Min nTPM: 1.1
P10809_1011
7.4
P10809_1029
7.1
P10809_1048
1.1
P10809_1067
4.5
P10809_1091
4.0
P10809_1104
2.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 25.7
Samples: 4
Max nTPM: 31.2
Min nTPM: 20.1
RHH5310_R3677
21.9
RHH5218_R3590
29.6
RHH5247_R3619
31.2
RHH5276_R3648
20.1
Naive B-cell nTPM: 19.8
Samples: 4
Max nTPM: 25.1
Min nTPM: 15.1
RHH5308_R3675
19.3
RHH5216_R3588
15.1
RHH5245_R3617
19.6
RHH5274_R3646
25.1
Non-switched memory B-cell nTPM: 22.5
Samples: 4
Max nTPM: 28.0
Min nTPM: 19.2
RHH5309_R3676
22.6
RHH5217_R3589
19.2
RHH5246_R3618
20.0
RHH5275_R3647
28.0
Plasmablast nTPM: 19.2
Samples: 4
Max nTPM: 28.5
Min nTPM: 7.0
RHH5312_R3679
17.3
RHH5220_R3592
23.8
RHH5249_R3621
28.5
RHH5278_R3650
7.0
Switched memory B-cell nTPM: 22.2
Samples: 4
Max nTPM: 30.1
Min nTPM: 18.7
RHH5311_R3678
20.2
RHH5219_R3591
30.1
RHH5248_R3620
19.6
RHH5277_R3649
18.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.6
Schmiedel sample id
TPM
Naive B-cell TPM: 51.6
Samples: 91
Max TPM: 70.2
Min TPM: 37.7
B_CELL_NAIVE_1
70.2
B_CELL_NAIVE_2
67.3
B_CELL_NAIVE_3
66.5
B_CELL_NAIVE_4
64.1
B_CELL_NAIVE_5
64.0
B_CELL_NAIVE_6
63.0
B_CELL_NAIVE_7
62.8
B_CELL_NAIVE_8
62.6
B_CELL_NAIVE_9
62.0
B_CELL_NAIVE_10
61.2
B_CELL_NAIVE_11
59.7
B_CELL_NAIVE_12
59.3
B_CELL_NAIVE_13
58.8
B_CELL_NAIVE_14
58.5
B_CELL_NAIVE_15
57.5
B_CELL_NAIVE_16
57.4
B_CELL_NAIVE_17
57.2
B_CELL_NAIVE_18
56.6
B_CELL_NAIVE_19
56.6
B_CELL_NAIVE_20
56.4
B_CELL_NAIVE_21
56.2
B_CELL_NAIVE_22
56.1
B_CELL_NAIVE_23
55.5
B_CELL_NAIVE_24
55.3
B_CELL_NAIVE_25
55.3
B_CELL_NAIVE_26
55.2
B_CELL_NAIVE_27
55.1
B_CELL_NAIVE_28
54.9
B_CELL_NAIVE_29
54.6
B_CELL_NAIVE_30
54.6
B_CELL_NAIVE_31
54.4
B_CELL_NAIVE_32
54.4
B_CELL_NAIVE_33
53.6
B_CELL_NAIVE_34
53.5
B_CELL_NAIVE_35
53.3
B_CELL_NAIVE_36
53.1
B_CELL_NAIVE_37
53.0
B_CELL_NAIVE_38
52.6
B_CELL_NAIVE_39
52.2
B_CELL_NAIVE_40
51.8
B_CELL_NAIVE_41
51.7
B_CELL_NAIVE_42
51.7
B_CELL_NAIVE_43
51.1
B_CELL_NAIVE_44
51.1
B_CELL_NAIVE_45
51.0
B_CELL_NAIVE_46
50.9
B_CELL_NAIVE_47
50.9
B_CELL_NAIVE_48
50.8
B_CELL_NAIVE_49
50.8
B_CELL_NAIVE_50
50.6
B_CELL_NAIVE_51
50.5
B_CELL_NAIVE_52
50.0
B_CELL_NAIVE_53
49.6
B_CELL_NAIVE_54
49.5
B_CELL_NAIVE_55
49.4
B_CELL_NAIVE_56
49.1
B_CELL_NAIVE_57
48.8
B_CELL_NAIVE_58
48.8
B_CELL_NAIVE_59
48.6
B_CELL_NAIVE_60
48.2
B_CELL_NAIVE_61
48.1
B_CELL_NAIVE_62
47.9
B_CELL_NAIVE_63
47.8
B_CELL_NAIVE_64
47.6
B_CELL_NAIVE_65
47.5
B_CELL_NAIVE_66
47.3
B_CELL_NAIVE_67
47.3
B_CELL_NAIVE_68
47.3
B_CELL_NAIVE_69
47.2
B_CELL_NAIVE_70
47.1
B_CELL_NAIVE_71
46.8
B_CELL_NAIVE_72
46.5
B_CELL_NAIVE_73
46.4
B_CELL_NAIVE_74
45.5
B_CELL_NAIVE_75
45.4
B_CELL_NAIVE_76
45.2
B_CELL_NAIVE_77
45.1
B_CELL_NAIVE_78
45.0
B_CELL_NAIVE_79
44.9
B_CELL_NAIVE_80
44.7
B_CELL_NAIVE_81
44.2
B_CELL_NAIVE_82
43.3
B_CELL_NAIVE_83
42.3
B_CELL_NAIVE_84
42.1
B_CELL_NAIVE_85
41.9
B_CELL_NAIVE_86
41.6
B_CELL_NAIVE_87
41.5
B_CELL_NAIVE_88
40.9
B_CELL_NAIVE_89
39.8
B_CELL_NAIVE_90
38.1
B_CELL_NAIVE_91
37.7
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The Human Protein Atlas project is funded
