A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.9
nTPM
Monaco:
19.5
nTPM
Schmiedel:
51.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.9
HPA sample
nTPM
NK-cell nTPM: 4.9
Samples: 6
Max nTPM: 8.0
Min nTPM: 0.7
P10809_1013
6.4
P10809_1033
4.4
P10809_1052
4.5
P10809_1071
0.7
P10809_1093
5.4
P10809_1103
8.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.5
Monaco sample
nTPM
NK-cell nTPM: 19.5
Samples: 4
Max nTPM: 26.8
Min nTPM: 12.4
RHH5316_R3683
16.5
RHH5224_R3596
12.4
RHH5253_R3625
26.8
RHH5282_R3654
22.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.9
Schmiedel sample id
TPM
NK-cell TPM: 51.9
Samples: 90
Max TPM: 80.7
Min TPM: 29.8
NK_1
80.7
NK_2
78.9
NK_3
75.4
NK_4
73.9
NK_5
68.2
NK_6
67.2
NK_7
66.5
NK_8
66.0
NK_9
64.7
NK_10
63.9
NK_11
63.5
NK_12
63.5
NK_13
62.0
NK_14
61.9
NK_15
61.4
NK_16
59.6
NK_17
59.3
NK_18
59.0
NK_19
57.7
NK_20
57.4
NK_21
57.2
NK_22
56.9
NK_23
56.6
NK_24
56.5
NK_25
56.4
NK_26
56.4
NK_27
56.1
NK_28
55.7
NK_29
55.6
NK_30
55.6
NK_31
55.5
NK_32
55.5
NK_33
55.4
NK_34
55.1
NK_35
54.9
NK_36
54.4
NK_37
54.3
NK_38
54.3
NK_39
54.1
NK_40
54.0
NK_41
53.8
NK_42
53.5
NK_43
52.9
NK_44
52.9
NK_45
52.4
NK_46
52.1
NK_47
52.0
NK_48
51.3
NK_49
50.6
NK_50
50.6
NK_51
50.3
NK_52
50.0
NK_53
49.7
NK_54
49.7
NK_55
49.6
NK_56
49.4
NK_57
49.3
NK_58
49.3
NK_59
47.9
NK_60
47.8
NK_61
47.8
NK_62
47.8
NK_63
46.7
NK_64
46.6
NK_65
46.4
NK_66
46.3
NK_67
46.3
NK_68
46.0
NK_69
45.0
NK_70
43.6
NK_71
43.1
NK_72
42.3
NK_73
41.9
NK_74
41.0
NK_75
41.0
NK_76
40.8
NK_77
40.2
NK_78
40.0
NK_79
39.6
NK_80
38.7
NK_81
38.6
NK_82
38.3
NK_83
37.3
NK_84
37.3
NK_85
37.2
NK_86
36.9
NK_87
36.7
NK_88
34.7
NK_89
33.9
NK_90
29.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
