A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.6
nTPM
Monaco:
23.1
nTPM
Schmiedel:
56.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.6
HPA sample
nTPM
Classical monocyte nTPM: 6.6
Samples: 6
Max nTPM: 7.8
Min nTPM: 3.9
P10809_1003
6.8
P10809_1020
7.6
P10809_1039
7.8
P10809_1058
6.4
P10809_1080
3.9
P10809_1107
6.9
Intermediate monocyte nTPM: 4.1
Samples: 6
Max nTPM: 8.6
Min nTPM: 0.7
P10809_1004
3.8
P10809_1023
4.4
P10809_1042
3.6
P10809_1061
0.7
P10809_1081
3.7
P10809_1108
8.6
Non-classical monocyte nTPM: 4.7
Samples: 5
Max nTPM: 7.8
Min nTPM: 0.0
P10809_1005
7.5
P10809_1053
4.3
P10809_1072
0.0
P10809_1082
7.8
P10809_1109
4.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.1
Monaco sample
nTPM
Classical monocyte nTPM: 23.1
Samples: 4
Max nTPM: 26.8
Min nTPM: 12.7
RHH5313_R3680
12.7
RHH5221_R3593
26.2
RHH5250_R3622
26.7
RHH5279_R3651
26.8
Intermediate monocyte nTPM: 17.4
Samples: 4
Max nTPM: 22.4
Min nTPM: 14.1
RHH5314_R3681
16.8
RHH5222_R3594
16.3
RHH5251_R3623
22.4
RHH5280_R3652
14.1
Non-classical monocyte nTPM: 21.5
Samples: 4
Max nTPM: 28.5
Min nTPM: 12.8
RHH5315_R3682
20.3
RHH5223_R3595
12.8
RHH5252_R3624
24.5
RHH5281_R3653
28.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.5
Schmiedel sample id
TPM
Classical monocyte TPM: 44.2
Samples: 91
Max TPM: 56.8
Min TPM: 32.3
MONOCYTES_1
56.8
MONOCYTES_2
53.9
MONOCYTES_3
53.4
MONOCYTES_4
52.2
MONOCYTES_5
51.6
MONOCYTES_6
51.3
MONOCYTES_7
51.1
MONOCYTES_8
51.0
MONOCYTES_9
50.8
MONOCYTES_10
50.3
MONOCYTES_11
49.9
MONOCYTES_12
49.7
MONOCYTES_13
49.6
MONOCYTES_14
49.4
MONOCYTES_15
48.9
MONOCYTES_16
48.7
MONOCYTES_17
48.7
MONOCYTES_18
48.4
MONOCYTES_19
48.3
MONOCYTES_20
48.2
MONOCYTES_21
48.2
MONOCYTES_22
47.7
MONOCYTES_23
47.6
MONOCYTES_24
47.5
MONOCYTES_25
47.5
MONOCYTES_26
47.4
MONOCYTES_27
47.2
MONOCYTES_28
47.0
MONOCYTES_29
46.8
MONOCYTES_30
46.8
MONOCYTES_31
46.4
MONOCYTES_32
46.4
MONOCYTES_33
46.0
MONOCYTES_34
46.0
MONOCYTES_35
45.8
MONOCYTES_36
45.7
MONOCYTES_37
45.5
MONOCYTES_38
45.5
MONOCYTES_39
45.4
MONOCYTES_40
45.0
MONOCYTES_41
44.9
MONOCYTES_42
44.8
MONOCYTES_43
44.8
MONOCYTES_44
44.3
MONOCYTES_45
44.0
MONOCYTES_46
44.0
MONOCYTES_47
43.9
MONOCYTES_48
43.9
MONOCYTES_49
43.8
MONOCYTES_50
43.8
MONOCYTES_51
43.7
MONOCYTES_52
43.7
MONOCYTES_53
43.6
MONOCYTES_54
43.1
MONOCYTES_55
43.1
MONOCYTES_56
42.9
MONOCYTES_57
42.6
MONOCYTES_58
42.4
MONOCYTES_59
42.2
MONOCYTES_60
42.0
MONOCYTES_61
42.0
MONOCYTES_62
41.8
MONOCYTES_63
41.8
MONOCYTES_64
41.6
MONOCYTES_65
41.4
MONOCYTES_66
41.3
MONOCYTES_67
41.1
MONOCYTES_68
41.0
MONOCYTES_69
40.9
MONOCYTES_70
40.7
MONOCYTES_71
40.6
MONOCYTES_72
40.4
MONOCYTES_73
40.2
MONOCYTES_74
39.6
MONOCYTES_75
39.5
MONOCYTES_76
39.4
MONOCYTES_77
39.4
MONOCYTES_78
39.3
MONOCYTES_79
39.2
MONOCYTES_80
39.1
MONOCYTES_81
38.7
MONOCYTES_82
38.1
MONOCYTES_83
37.8
MONOCYTES_84
37.7
MONOCYTES_85
37.0
MONOCYTES_86
35.9
MONOCYTES_87
35.4
MONOCYTES_88
35.4
MONOCYTES_89
35.3
MONOCYTES_90
33.9
MONOCYTES_91
32.3
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Non-classical monocyte TPM: 56.5
Samples: 90
Max TPM: 78.0
Min TPM: 41.2
M2_1
78.0
M2_2
71.9
M2_3
70.7
M2_4
70.3
M2_5
69.7
M2_6
69.3
M2_7
69.0
M2_8
68.4
M2_9
68.2
M2_10
66.0
M2_11
64.8
M2_12
64.1
M2_13
63.4
M2_14
63.0
M2_15
62.5
M2_16
62.2
M2_17
62.0
M2_18
61.9
M2_19
61.9
M2_20
61.9
M2_21
61.7
M2_22
61.7
M2_23
60.8
M2_24
60.5
M2_25
60.1
M2_26
59.9
M2_27
59.4
M2_28
59.2
M2_29
59.0
M2_30
58.9
M2_31
58.7
M2_32
58.6
M2_33
58.5
M2_34
58.3
M2_35
58.3
M2_36
58.2
M2_37
57.7
M2_38
57.0
M2_39
56.9
M2_40
56.9
M2_41
56.8
M2_42
56.7
M2_43
56.7
M2_44
56.2
M2_45
56.1
M2_46
56.1
M2_47
55.9
M2_48
55.6
M2_49
55.2
M2_50
55.1
M2_51
55.1
M2_52
54.7
M2_53
54.7
M2_54
54.4
M2_55
54.1
M2_56
54.1
M2_57
53.9
M2_58
53.8
M2_59
53.5
M2_60
53.5
M2_61
53.2
M2_62
53.2
M2_63
53.1
M2_64
52.9
M2_65
52.8
M2_66
52.6
M2_67
52.3
M2_68
52.1
M2_69
51.9
M2_70
51.7
M2_71
51.1
M2_72
50.4
M2_73
50.4
M2_74
49.9
M2_75
49.8
M2_76
49.6
M2_77
49.3
M2_78
48.7
M2_79
48.5
M2_80
47.7
M2_81
46.9
M2_82
46.7
M2_83
46.3
M2_84
46.0
M2_85
45.8
M2_86
45.5
M2_87
45.5
M2_88
44.7
M2_89
43.0
M2_90
41.2
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