A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.9
nTPM
Monaco:
69.2
nTPM
Schmiedel:
92.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.9
HPA sample
nTPM
Memory B-cell nTPM: 9.9
Samples: 6
Max nTPM: 27.4
Min nTPM: 4.2
P10809_1017
6.1
P10809_1025
4.2
P10809_1044
27.4
P10809_1063
6.1
P10809_1092
9.0
P10809_1105
6.4
Naive B-cell nTPM: 6.9
Samples: 6
Max nTPM: 8.8
Min nTPM: 6.1
P10809_1011
6.6
P10809_1029
6.1
P10809_1048
7.0
P10809_1067
8.8
P10809_1091
6.4
P10809_1104
6.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 45.7
Samples: 4
Max nTPM: 57.4
Min nTPM: 36.4
RHH5310_R3677
44.5
RHH5218_R3590
36.4
RHH5247_R3619
44.6
RHH5276_R3648
57.4
Naive B-cell nTPM: 47.3
Samples: 4
Max nTPM: 57.0
Min nTPM: 36.7
RHH5308_R3675
39.2
RHH5216_R3588
36.7
RHH5245_R3617
56.2
RHH5274_R3646
57.0
Non-switched memory B-cell nTPM: 49.3
Samples: 4
Max nTPM: 57.5
Min nTPM: 34.6
RHH5309_R3676
49.1
RHH5217_R3589
57.5
RHH5246_R3618
34.6
RHH5275_R3647
56.0
Plasmablast nTPM: 69.2
Samples: 4
Max nTPM: 82.1
Min nTPM: 60.4
RHH5312_R3679
71.7
RHH5220_R3592
60.4
RHH5249_R3621
62.6
RHH5278_R3650
82.1
Switched memory B-cell nTPM: 52.4
Samples: 4
Max nTPM: 61.9
Min nTPM: 39.5
RHH5311_R3678
52.3
RHH5219_R3591
39.5
RHH5248_R3620
56.0
RHH5277_R3649
61.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
92.0
Schmiedel sample id
TPM
Naive B-cell TPM: 92.0
Samples: 91
Max TPM: 147.4
Min TPM: 59.2
B_CELL_NAIVE_1
147.4
B_CELL_NAIVE_2
135.0
B_CELL_NAIVE_3
134.8
B_CELL_NAIVE_4
134.6
B_CELL_NAIVE_5
120.8
B_CELL_NAIVE_6
119.3
B_CELL_NAIVE_7
116.7
B_CELL_NAIVE_8
112.3
B_CELL_NAIVE_9
112.2
B_CELL_NAIVE_10
112.0
B_CELL_NAIVE_11
111.5
B_CELL_NAIVE_12
110.4
B_CELL_NAIVE_13
108.6
B_CELL_NAIVE_14
106.9
B_CELL_NAIVE_15
104.0
B_CELL_NAIVE_16
102.6
B_CELL_NAIVE_17
101.6
B_CELL_NAIVE_18
101.5
B_CELL_NAIVE_19
101.0
B_CELL_NAIVE_20
100.9
B_CELL_NAIVE_21
100.1
B_CELL_NAIVE_22
98.1
B_CELL_NAIVE_23
97.3
B_CELL_NAIVE_24
96.3
B_CELL_NAIVE_25
96.1
B_CELL_NAIVE_26
95.9
B_CELL_NAIVE_27
95.9
B_CELL_NAIVE_28
95.3
B_CELL_NAIVE_29
94.9
B_CELL_NAIVE_30
94.9
B_CELL_NAIVE_31
94.8
B_CELL_NAIVE_32
94.2
B_CELL_NAIVE_33
93.8
B_CELL_NAIVE_34
93.7
B_CELL_NAIVE_35
93.4
B_CELL_NAIVE_36
93.2
B_CELL_NAIVE_37
93.1
B_CELL_NAIVE_38
92.4
B_CELL_NAIVE_39
92.1
B_CELL_NAIVE_40
91.8
B_CELL_NAIVE_41
91.7
B_CELL_NAIVE_42
91.6
B_CELL_NAIVE_43
90.4
B_CELL_NAIVE_44
90.0
B_CELL_NAIVE_45
89.7
B_CELL_NAIVE_46
89.7
B_CELL_NAIVE_47
89.4
B_CELL_NAIVE_48
89.2
B_CELL_NAIVE_49
89.2
B_CELL_NAIVE_50
89.1
B_CELL_NAIVE_51
88.2
B_CELL_NAIVE_52
88.1
B_CELL_NAIVE_53
88.0
B_CELL_NAIVE_54
87.9
B_CELL_NAIVE_55
87.8
B_CELL_NAIVE_56
87.6
B_CELL_NAIVE_57
86.6
B_CELL_NAIVE_58
86.0
B_CELL_NAIVE_59
85.7
B_CELL_NAIVE_60
85.1
B_CELL_NAIVE_61
85.1
B_CELL_NAIVE_62
84.7
B_CELL_NAIVE_63
84.3
B_CELL_NAIVE_64
84.2
B_CELL_NAIVE_65
83.5
B_CELL_NAIVE_66
82.5
B_CELL_NAIVE_67
82.5
B_CELL_NAIVE_68
82.4
B_CELL_NAIVE_69
82.3
B_CELL_NAIVE_70
81.5
B_CELL_NAIVE_71
80.6
B_CELL_NAIVE_72
79.9
B_CELL_NAIVE_73
79.8
B_CELL_NAIVE_74
79.4
B_CELL_NAIVE_75
78.3
B_CELL_NAIVE_76
78.3
B_CELL_NAIVE_77
78.1
B_CELL_NAIVE_78
77.9
B_CELL_NAIVE_79
76.5
B_CELL_NAIVE_80
76.2
B_CELL_NAIVE_81
75.9
B_CELL_NAIVE_82
75.8
B_CELL_NAIVE_83
75.0
B_CELL_NAIVE_84
74.9
B_CELL_NAIVE_85
74.6
B_CELL_NAIVE_86
74.5
B_CELL_NAIVE_87
73.9
B_CELL_NAIVE_88
72.4
B_CELL_NAIVE_89
72.3
B_CELL_NAIVE_90
66.2
B_CELL_NAIVE_91
59.2
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The Human Protein Atlas project is funded
