A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.5
nTPM
Monaco:
40.5
nTPM
Schmiedel:
96.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.5
HPA sample
nTPM
Classical monocyte nTPM: 4.0
Samples: 6
Max nTPM: 7.2
Min nTPM: 2.7
P10809_1003
4.8
P10809_1020
2.7
P10809_1039
2.7
P10809_1058
7.2
P10809_1080
3.6
P10809_1107
2.8
Intermediate monocyte nTPM: 4.5
Samples: 6
Max nTPM: 6.8
Min nTPM: 1.9
P10809_1004
5.0
P10809_1023
1.9
P10809_1042
4.8
P10809_1061
6.8
P10809_1081
5.6
P10809_1108
2.7
Non-classical monocyte nTPM: 3.4
Samples: 5
Max nTPM: 6.3
Min nTPM: 0.7
P10809_1005
3.4
P10809_1053
2.3
P10809_1072
0.7
P10809_1082
6.3
P10809_1109
4.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.5
Monaco sample
nTPM
Classical monocyte nTPM: 40.4
Samples: 4
Max nTPM: 50.9
Min nTPM: 33.3
RHH5313_R3680
35.2
RHH5221_R3593
50.9
RHH5250_R3622
33.3
RHH5279_R3651
42.4
Intermediate monocyte nTPM: 38.2
Samples: 4
Max nTPM: 45.0
Min nTPM: 25.9
RHH5314_R3681
38.3
RHH5222_R3594
45.0
RHH5251_R3623
25.9
RHH5280_R3652
43.7
Non-classical monocyte nTPM: 40.3
Samples: 4
Max nTPM: 44.7
Min nTPM: 31.1
RHH5315_R3682
31.1
RHH5223_R3595
42.8
RHH5252_R3624
44.7
RHH5281_R3653
42.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.6
Schmiedel sample id
TPM
Classical monocyte TPM: 60.9
Samples: 91
Max TPM: 78.3
Min TPM: 45.5
MONOCYTES_1
78.3
MONOCYTES_2
76.2
MONOCYTES_3
74.6
MONOCYTES_4
74.3
MONOCYTES_5
73.2
MONOCYTES_6
73.0
MONOCYTES_7
72.5
MONOCYTES_8
71.6
MONOCYTES_9
71.6
MONOCYTES_10
70.6
MONOCYTES_11
69.5
MONOCYTES_12
69.1
MONOCYTES_13
69.0
MONOCYTES_14
68.8
MONOCYTES_15
68.8
MONOCYTES_16
68.3
MONOCYTES_17
67.6
MONOCYTES_18
67.5
MONOCYTES_19
67.4
MONOCYTES_20
67.3
MONOCYTES_21
67.1
MONOCYTES_22
65.9
MONOCYTES_23
65.6
MONOCYTES_24
65.5
MONOCYTES_25
65.3
MONOCYTES_26
65.3
MONOCYTES_27
65.2
MONOCYTES_28
65.0
MONOCYTES_29
65.0
MONOCYTES_30
64.6
MONOCYTES_31
64.3
MONOCYTES_32
63.7
MONOCYTES_33
63.5
MONOCYTES_34
63.3
MONOCYTES_35
63.2
MONOCYTES_36
62.5
MONOCYTES_37
62.4
MONOCYTES_38
62.4
MONOCYTES_39
62.3
MONOCYTES_40
62.1
MONOCYTES_41
61.9
MONOCYTES_42
61.4
MONOCYTES_43
61.3
MONOCYTES_44
61.0
MONOCYTES_45
60.8
MONOCYTES_46
60.3
MONOCYTES_47
60.2
MONOCYTES_48
60.2
MONOCYTES_49
60.2
MONOCYTES_50
60.1
MONOCYTES_51
59.7
MONOCYTES_52
59.6
MONOCYTES_53
59.5
MONOCYTES_54
59.5
MONOCYTES_55
59.0
MONOCYTES_56
58.5
MONOCYTES_57
58.1
MONOCYTES_58
58.0
MONOCYTES_59
57.7
MONOCYTES_60
57.0
MONOCYTES_61
56.4
MONOCYTES_62
56.3
MONOCYTES_63
56.3
MONOCYTES_64
56.2
MONOCYTES_65
55.9
MONOCYTES_66
55.9
MONOCYTES_67
55.8
MONOCYTES_68
55.5
MONOCYTES_69
55.5
MONOCYTES_70
55.1
MONOCYTES_71
54.1
MONOCYTES_72
54.1
MONOCYTES_73
53.8
MONOCYTES_74
53.4
MONOCYTES_75
53.1
MONOCYTES_76
53.1
MONOCYTES_77
52.9
MONOCYTES_78
52.8
MONOCYTES_79
52.8
MONOCYTES_80
52.7
MONOCYTES_81
52.7
MONOCYTES_82
52.6
MONOCYTES_83
51.3
MONOCYTES_84
50.5
MONOCYTES_85
50.4
MONOCYTES_86
50.2
MONOCYTES_87
50.0
MONOCYTES_88
49.9
MONOCYTES_89
49.4
MONOCYTES_90
47.5
MONOCYTES_91
45.5
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Non-classical monocyte TPM: 96.6
Samples: 90
Max TPM: 143.7
Min TPM: 61.7
M2_1
143.7
M2_2
141.6
M2_3
137.7
M2_4
130.8
M2_5
126.2
M2_6
125.1
M2_7
123.8
M2_8
123.1
M2_9
119.8
M2_10
118.3
M2_11
116.3
M2_12
116.2
M2_13
115.1
M2_14
112.9
M2_15
110.0
M2_16
108.2
M2_17
107.7
M2_18
107.3
M2_19
106.9
M2_20
105.4
M2_21
105.0
M2_22
104.6
M2_23
104.2
M2_24
103.4
M2_25
102.7
M2_26
102.4
M2_27
102.2
M2_28
102.2
M2_29
101.9
M2_30
101.6
M2_31
101.1
M2_32
100.4
M2_33
100.3
M2_34
99.8
M2_35
98.6
M2_36
98.6
M2_37
98.6
M2_38
97.5
M2_39
97.3
M2_40
96.1
M2_41
96.1
M2_42
96.1
M2_43
95.3
M2_44
94.6
M2_45
93.8
M2_46
93.6
M2_47
92.9
M2_48
92.5
M2_49
92.5
M2_50
92.2
M2_51
92.2
M2_52
91.2
M2_53
88.9
M2_54
88.8
M2_55
88.5
M2_56
88.4
M2_57
88.1
M2_58
88.1
M2_59
88.0
M2_60
87.8
M2_61
87.8
M2_62
87.6
M2_63
87.4
M2_64
87.3
M2_65
86.0
M2_66
85.8
M2_67
85.6
M2_68
85.2
M2_69
85.1
M2_70
84.9
M2_71
84.8
M2_72
84.3
M2_73
83.7
M2_74
83.4
M2_75
83.4
M2_76
82.7
M2_77
82.3
M2_78
80.9
M2_79
80.9
M2_80
80.8
M2_81
80.2
M2_82
80.1
M2_83
77.9
M2_84
77.8
M2_85
76.8
M2_86
76.4
M2_87
75.4
M2_88
75.2
M2_89
74.7
M2_90
61.7
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