A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.2
nTPM
Monaco:
73.6
nTPM
Schmiedel:
162.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.2
HPA sample
nTPM
NK-cell nTPM: 5.1
Samples: 6
Max nTPM: 13.0
Min nTPM: 1.7
P10809_1013
13.0
P10809_1033
2.2
P10809_1052
6.2
P10809_1071
3.5
P10809_1093
1.7
P10809_1103
4.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.6
Monaco sample
nTPM
NK-cell nTPM: 73.6
Samples: 4
Max nTPM: 80.7
Min nTPM: 70.4
RHH5316_R3683
80.7
RHH5224_R3596
70.9
RHH5253_R3625
70.4
RHH5282_R3654
72.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
162.8
Schmiedel sample id
TPM
NK-cell TPM: 162.8
Samples: 90
Max TPM: 286.1
Min TPM: 92.8
NK_1
286.1
NK_2
270.4
NK_3
258.0
NK_4
244.1
NK_5
241.1
NK_6
231.6
NK_7
229.4
NK_8
225.3
NK_9
212.5
NK_10
206.1
NK_11
205.9
NK_12
204.9
NK_13
204.9
NK_14
200.6
NK_15
200.1
NK_16
190.4
NK_17
190.4
NK_18
190.3
NK_19
188.3
NK_20
186.5
NK_21
186.5
NK_22
183.9
NK_23
179.8
NK_24
178.4
NK_25
178.2
NK_26
178.0
NK_27
176.5
NK_28
175.3
NK_29
171.8
NK_30
170.2
NK_31
169.4
NK_32
169.0
NK_33
168.4
NK_34
168.1
NK_35
167.7
NK_36
167.2
NK_37
166.0
NK_38
163.4
NK_39
160.3
NK_40
159.6
NK_41
159.3
NK_42
157.7
NK_43
157.4
NK_44
155.7
NK_45
155.2
NK_46
154.9
NK_47
153.3
NK_48
153.1
NK_49
151.5
NK_50
150.9
NK_51
150.3
NK_52
149.9
NK_53
149.4
NK_54
148.5
NK_55
148.1
NK_56
148.1
NK_57
145.4
NK_58
144.9
NK_59
144.7
NK_60
144.4
NK_61
143.9
NK_62
142.8
NK_63
142.7
NK_64
142.7
NK_65
142.0
NK_66
141.1
NK_67
141.0
NK_68
136.9
NK_69
136.8
NK_70
135.3
NK_71
133.5
NK_72
131.6
NK_73
129.8
NK_74
129.8
NK_75
129.7
NK_76
128.8
NK_77
128.0
NK_78
124.9
NK_79
124.6
NK_80
124.5
NK_81
123.8
NK_82
122.5
NK_83
122.5
NK_84
119.8
NK_85
118.1
NK_86
117.2
NK_87
117.2
NK_88
99.2
NK_89
98.5
NK_90
92.8
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