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  • TP53INP2
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:306.3 nTPM
HPA Brain:406.1 nTPM
GTEx:306.3 nTPM
FANTOM5:212.2 Scaled Tags Per Million
Pig:65.6 nTPM
Mouse:104.9 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

406.1
Sample id Sample description nTPM
Amygdala
nTPM: 273.0
2695 Female, age 67, right hemisphere 521.7
2814 Male, age 76, right hemisphere 333.7
2517 Female, age 94, left hemisphere 179.7
1987 Female, age 91, left hemisphere 166.9
2514 Male, age 75, right hemisphere 163.0
Basal amygdala
nTPM: 265.1
2827 Female, age 67, right hemisphere 698.9
2685 Female, age 94, left hemisphere 231.6
1955 Male, age 76, both hemispheres 189.8
2110 Male, age 80, left hemisphere 183.3
2609 Male, age 75, right hemisphere 162.5
2243 Female, age 91, right hemisphere 124.3
Central amygdala
nTPM: 339.5
2826 Female, age 94, left hemisphere 739.7
1905 Male, age 76, both hemispheres 292.2
2515 Male, age 75, right hemisphere 245.5
2701 Female, age 91, right hemisphere 217.9
2239 Male, age 80, left hemisphere 202.4
Corticomedial amygdala
nTPM: 161.8
2535 Female, age 67, right hemisphere 373.2
2240 Male, age 76, both hemispheres 154.8
2428 Male, age 75, right hemisphere 143.8
2829 Male, age 80, left hemisphere 122.4
2429 Female, age 94, left hemisphere 89.4
2242 Female, age 91, right hemisphere 87.5
Lateral amygdala
nTPM: 406.1
2830 Female, age 67, right hemisphere 1008.4
2534 Female, age 94, left hemisphere 350.3
2256 Male, age 80, left hemisphere 303.5
2516 Male, age 75, right hemisphere 299.1
1883 Male, age 76, both hemispheres 268.6
2255 Female, age 91, right hemisphere 206.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 306.3
Samples: 181

Max nTPM: 1312.0
Min nTPM: 25.0
Std nTPM: 242.3
Median nTPM: 224.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1312.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1286.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1094.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 908.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 907.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 888.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 858.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 853.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 831.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 825.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 814.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 804.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 785.1
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 764.1
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 726.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 722.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 710.4
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 679.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 659.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 649.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 629.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 628.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 625.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 607.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 589.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 574.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 570.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 564.9
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 550.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 549.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 528.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 507.8
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 503.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 485.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 474.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 462.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 458.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 452.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 444.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 431.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 414.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 412.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 406.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 401.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 390.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 389.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 386.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 363.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 352.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 349.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 348.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 348.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 347.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 344.0
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 323.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 320.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 312.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 311.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 310.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 310.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 307.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 305.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 304.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 297.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 283.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 283.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 281.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 278.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 277.4
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 274.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 272.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 267.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 265.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 263.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 261.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 260.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 260.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 257.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 255.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 254.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 253.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 247.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 245.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 244.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 243.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 239.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 235.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 234.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 232.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 225.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 224.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 221.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 218.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 214.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 211.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 209.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 205.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 205.6
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 205.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 205.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 204.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 203.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 200.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 196.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 193.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 192.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 191.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 189.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 186.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 186.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 177.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 177.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 176.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 175.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 175.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 172.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 172.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 171.4
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 163.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 163.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 162.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 158.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 158.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 157.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 157.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 154.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 152.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 151.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 150.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 147.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 147.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 141.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 140.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 137.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 136.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 135.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 133.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 132.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 130.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 129.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 124.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 122.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 121.1
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 120.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 120.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 119.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 118.9
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 116.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 116.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 116.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 114.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 111.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 111.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 108.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 107.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 107.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 106.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 105.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 104.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 104.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 103.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 103.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 100.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 98.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 97.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 97.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 93.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 91.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 84.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 82.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 82.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 80.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 79.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 74.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 72.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 68.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 66.9
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 62.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 62.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 54.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 25.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

212.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 212.2
FF:10151-102I7 76 years, female 212.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.6
Pig sample Sample description nTPM
Amygdala
nTPM: 65.6
Samples: 4

Max nTPM: 106.5
Min nTPM: 41.2
Sample A Female 45.8
Sample B Female 106.5
Sample C Male 68.9
Sample D Male 41.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 105.0
Samples: 4

Max nTPM: 138.6
Min nTPM: 87.4
Sample A Male 87.4
Sample B Male 92.0
Sample C Female 138.6
Sample D Female 101.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.0
70192081 Antisense, RP_050517_01_C01, Mouse strain C57BL/6J (56 days, male) 1.0

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