A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.0
nTPM
Monaco:
6.0
nTPM
Schmiedel:
45.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
HPA sample
nTPM
Memory B-cell nTPM: 0.0
Samples: 6
Max nTPM: 0.0
Min nTPM: 0.0
P10809_1017
0.0
P10809_1025
0.0
P10809_1044
0.0
P10809_1063
0.0
P10809_1092
0.0
P10809_1105
0.0
Naive B-cell nTPM: 0.0
Samples: 6
Max nTPM: 0.2
Min nTPM: 0.0
P10809_1011
0.0
P10809_1029
0.0
P10809_1048
0.0
P10809_1067
0.2
P10809_1091
0.0
P10809_1104
0.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 4.5
Samples: 4
Max nTPM: 7.6
Min nTPM: 2.1
RHH5310_R3677
3.1
RHH5218_R3590
2.1
RHH5247_R3619
5.3
RHH5276_R3648
7.6
Naive B-cell nTPM: 3.4
Samples: 4
Max nTPM: 4.2
Min nTPM: 2.4
RHH5308_R3675
2.4
RHH5216_R3588
3.9
RHH5245_R3617
4.2
RHH5274_R3646
2.9
Non-switched memory B-cell nTPM: 6.1
Samples: 4
Max nTPM: 10.7
Min nTPM: 2.6
RHH5309_R3676
2.6
RHH5217_R3589
10.7
RHH5246_R3618
4.6
RHH5275_R3647
6.4
Plasmablast nTPM: 3.2
Samples: 4
Max nTPM: 4.8
Min nTPM: 0.7
RHH5312_R3679
0.7
RHH5220_R3592
4.8
RHH5249_R3621
3.8
RHH5278_R3650
3.3
Switched memory B-cell nTPM: 4.4
Samples: 4
Max nTPM: 8.1
Min nTPM: 2.4
RHH5311_R3678
2.9
RHH5219_R3591
4.2
RHH5248_R3620
2.4
RHH5277_R3649
8.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.0
Schmiedel sample id
TPM
Naive B-cell TPM: 45.0
Samples: 91
Max TPM: 109.4
Min TPM: 23.1
B_CELL_NAIVE_1
109.4
B_CELL_NAIVE_2
101.5
B_CELL_NAIVE_3
81.3
B_CELL_NAIVE_4
80.1
B_CELL_NAIVE_5
73.5
B_CELL_NAIVE_6
68.3
B_CELL_NAIVE_7
68.2
B_CELL_NAIVE_8
67.2
B_CELL_NAIVE_9
67.1
B_CELL_NAIVE_10
65.2
B_CELL_NAIVE_11
65.1
B_CELL_NAIVE_12
64.0
B_CELL_NAIVE_13
61.2
B_CELL_NAIVE_14
59.5
B_CELL_NAIVE_15
58.9
B_CELL_NAIVE_16
56.1
B_CELL_NAIVE_17
56.0
B_CELL_NAIVE_18
50.8
B_CELL_NAIVE_19
50.5
B_CELL_NAIVE_20
50.4
B_CELL_NAIVE_21
49.8
B_CELL_NAIVE_22
49.5
B_CELL_NAIVE_23
49.3
B_CELL_NAIVE_24
49.2
B_CELL_NAIVE_25
49.2
B_CELL_NAIVE_26
48.9
B_CELL_NAIVE_27
48.9
B_CELL_NAIVE_28
48.3
B_CELL_NAIVE_29
47.8
B_CELL_NAIVE_30
47.7
B_CELL_NAIVE_31
47.5
B_CELL_NAIVE_32
46.3
B_CELL_NAIVE_33
46.1
B_CELL_NAIVE_34
46.1
B_CELL_NAIVE_35
46.0
B_CELL_NAIVE_36
45.9
B_CELL_NAIVE_37
45.4
B_CELL_NAIVE_38
45.0
B_CELL_NAIVE_39
44.8
B_CELL_NAIVE_40
44.6
B_CELL_NAIVE_41
44.1
B_CELL_NAIVE_42
43.4
B_CELL_NAIVE_43
43.1
B_CELL_NAIVE_44
43.0
B_CELL_NAIVE_45
42.8
B_CELL_NAIVE_46
42.3
B_CELL_NAIVE_47
42.2
B_CELL_NAIVE_48
42.2
B_CELL_NAIVE_49
42.2
B_CELL_NAIVE_50
41.9
B_CELL_NAIVE_51
41.5
B_CELL_NAIVE_52
41.3
B_CELL_NAIVE_53
40.4
B_CELL_NAIVE_54
39.9
B_CELL_NAIVE_55
39.8
B_CELL_NAIVE_56
38.8
B_CELL_NAIVE_57
38.7
B_CELL_NAIVE_58
38.6
B_CELL_NAIVE_59
38.6
B_CELL_NAIVE_60
38.5
B_CELL_NAIVE_61
37.9
B_CELL_NAIVE_62
37.8
B_CELL_NAIVE_63
36.9
B_CELL_NAIVE_64
36.8
B_CELL_NAIVE_65
36.4
B_CELL_NAIVE_66
35.9
B_CELL_NAIVE_67
35.6
B_CELL_NAIVE_68
35.4
B_CELL_NAIVE_69
35.4
B_CELL_NAIVE_70
35.4
B_CELL_NAIVE_71
34.8
B_CELL_NAIVE_72
34.8
B_CELL_NAIVE_73
33.4
B_CELL_NAIVE_74
32.4
B_CELL_NAIVE_75
31.1
B_CELL_NAIVE_76
30.6
B_CELL_NAIVE_77
30.5
B_CELL_NAIVE_78
30.4
B_CELL_NAIVE_79
30.4
B_CELL_NAIVE_80
30.3
B_CELL_NAIVE_81
28.6
B_CELL_NAIVE_82
28.0
B_CELL_NAIVE_83
27.9
B_CELL_NAIVE_84
26.9
B_CELL_NAIVE_85
26.3
B_CELL_NAIVE_86
26.2
B_CELL_NAIVE_87
25.9
B_CELL_NAIVE_88
25.7
B_CELL_NAIVE_89
25.3
B_CELL_NAIVE_90
23.2
B_CELL_NAIVE_91
23.1
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The Human Protein Atlas project is funded
