A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.0
nTPM
Monaco:
2.8
nTPM
Schmiedel:
32.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.0
HPA sample
nTPM
NK-cell nTPM: 0.0
Samples: 6
Max nTPM: 0.0
Min nTPM: 0.0
P10809_1013
0.0
P10809_1033
0.0
P10809_1052
0.0
P10809_1071
0.0
P10809_1093
0.0
P10809_1103
0.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.8
Monaco sample
nTPM
NK-cell nTPM: 2.8
Samples: 4
Max nTPM: 5.9
Min nTPM: 1.5
RHH5316_R3683
1.9
RHH5224_R3596
1.9
RHH5253_R3625
5.9
RHH5282_R3654
1.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.9
Schmiedel sample id
TPM
NK-cell TPM: 32.9
Samples: 90
Max TPM: 82.9
Min TPM: 12.6
NK_1
82.9
NK_2
78.6
NK_3
63.1
NK_4
62.3
NK_5
61.2
NK_6
60.9
NK_7
57.7
NK_8
56.5
NK_9
50.8
NK_10
47.2
NK_11
45.9
NK_12
44.8
NK_13
44.0
NK_14
43.1
NK_15
42.9
NK_16
42.7
NK_17
42.2
NK_18
41.7
NK_19
41.4
NK_20
41.1
NK_21
40.4
NK_22
39.0
NK_23
38.8
NK_24
38.7
NK_25
38.5
NK_26
38.1
NK_27
36.9
NK_28
36.6
NK_29
36.5
NK_30
35.2
NK_31
34.9
NK_32
34.8
NK_33
34.7
NK_34
34.3
NK_35
34.2
NK_36
34.2
NK_37
33.9
NK_38
33.5
NK_39
33.4
NK_40
32.2
NK_41
32.0
NK_42
32.0
NK_43
31.6
NK_44
31.5
NK_45
31.2
NK_46
31.1
NK_47
30.7
NK_48
30.3
NK_49
29.9
NK_50
29.5
NK_51
29.5
NK_52
28.5
NK_53
28.1
NK_54
28.0
NK_55
26.9
NK_56
26.6
NK_57
26.5
NK_58
26.3
NK_59
26.3
NK_60
26.1
NK_61
26.0
NK_62
25.9
NK_63
25.8
NK_64
25.3
NK_65
24.2
NK_66
23.8
NK_67
23.6
NK_68
23.3
NK_69
23.3
NK_70
23.2
NK_71
23.1
NK_72
22.5
NK_73
22.4
NK_74
22.0
NK_75
21.4
NK_76
20.3
NK_77
20.0
NK_78
19.3
NK_79
18.3
NK_80
18.1
NK_81
18.1
NK_82
18.0
NK_83
17.7
NK_84
17.1
NK_85
17.0
NK_86
16.3
NK_87
15.9
NK_88
14.0
NK_89
13.9
NK_90
12.6
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