A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.1
nTPM
Monaco:
11.4
nTPM
Schmiedel:
114.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.1
HPA sample
nTPM
Classical monocyte nTPM: 0.0
Samples: 6
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1003
0.0
P10809_1020
0.1
P10809_1039
0.0
P10809_1058
0.0
P10809_1080
0.0
P10809_1107
0.1
Intermediate monocyte nTPM: 0.1
Samples: 6
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1004
0.1
P10809_1023
0.0
P10809_1042
0.3
P10809_1061
0.0
P10809_1081
0.2
P10809_1108
0.0
Non-classical monocyte nTPM: 0.0
Samples: 5
Max nTPM: 0.0
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.0
P10809_1072
0.0
P10809_1082
0.0
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
11.4
Monaco sample
nTPM
Classical monocyte nTPM: 7.6
Samples: 4
Max nTPM: 11.2
Min nTPM: 3.5
RHH5313_R3680
3.5
RHH5221_R3593
6.2
RHH5250_R3622
11.2
RHH5279_R3651
9.7
Intermediate monocyte nTPM: 11.4
Samples: 4
Max nTPM: 25.6
Min nTPM: 2.3
RHH5314_R3681
3.9
RHH5222_R3594
13.8
RHH5251_R3623
25.6
RHH5280_R3652
2.3
Non-classical monocyte nTPM: 6.6
Samples: 4
Max nTPM: 11.3
Min nTPM: 1.5
RHH5315_R3682
1.5
RHH5223_R3595
8.4
RHH5252_R3624
11.3
RHH5281_R3653
5.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
114.9
Schmiedel sample id
TPM
Classical monocyte TPM: 114.9
Samples: 91
Max TPM: 222.8
Min TPM: 62.1
MONOCYTES_1
222.8
MONOCYTES_2
189.6
MONOCYTES_3
176.3
MONOCYTES_4
169.9
MONOCYTES_5
161.5
MONOCYTES_6
161.2
MONOCYTES_7
160.6
MONOCYTES_8
159.6
MONOCYTES_9
156.3
MONOCYTES_10
155.7
MONOCYTES_11
152.7
MONOCYTES_12
150.4
MONOCYTES_13
149.6
MONOCYTES_14
146.7
MONOCYTES_15
146.2
MONOCYTES_16
144.8
MONOCYTES_17
144.3
MONOCYTES_18
140.7
MONOCYTES_19
140.1
MONOCYTES_20
136.2
MONOCYTES_21
135.2
MONOCYTES_22
133.1
MONOCYTES_23
131.8
MONOCYTES_24
131.7
MONOCYTES_25
131.1
MONOCYTES_26
130.5
MONOCYTES_27
129.3
MONOCYTES_28
129.2
MONOCYTES_29
127.0
MONOCYTES_30
126.2
MONOCYTES_31
125.5
MONOCYTES_32
124.6
MONOCYTES_33
124.3
MONOCYTES_34
123.7
MONOCYTES_35
123.5
MONOCYTES_36
122.0
MONOCYTES_37
121.6
MONOCYTES_38
121.1
MONOCYTES_39
121.1
MONOCYTES_40
118.3
MONOCYTES_41
118.2
MONOCYTES_42
118.2
MONOCYTES_43
117.1
MONOCYTES_44
116.8
MONOCYTES_45
113.9
MONOCYTES_46
113.0
MONOCYTES_47
112.1
MONOCYTES_48
111.5
MONOCYTES_49
111.3
MONOCYTES_50
111.0
MONOCYTES_51
110.5
MONOCYTES_52
109.3
MONOCYTES_53
106.9
MONOCYTES_54
105.3
MONOCYTES_55
104.7
MONOCYTES_56
102.1
MONOCYTES_57
101.9
MONOCYTES_58
101.9
MONOCYTES_59
98.8
MONOCYTES_60
98.8
MONOCYTES_61
97.6
MONOCYTES_62
97.2
MONOCYTES_63
96.9
MONOCYTES_64
96.0
MONOCYTES_65
95.1
MONOCYTES_66
94.2
MONOCYTES_67
92.7
MONOCYTES_68
91.8
MONOCYTES_69
91.2
MONOCYTES_70
89.8
MONOCYTES_71
89.6
MONOCYTES_72
88.9
MONOCYTES_73
88.6
MONOCYTES_74
88.3
MONOCYTES_75
87.0
MONOCYTES_76
86.2
MONOCYTES_77
83.5
MONOCYTES_78
83.4
MONOCYTES_79
81.8
MONOCYTES_80
79.4
MONOCYTES_81
76.1
MONOCYTES_82
75.9
MONOCYTES_83
75.7
MONOCYTES_84
75.3
MONOCYTES_85
72.7
MONOCYTES_86
72.2
MONOCYTES_87
69.6
MONOCYTES_88
67.6
MONOCYTES_89
64.4
MONOCYTES_90
63.9
MONOCYTES_91
62.1
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Non-classical monocyte TPM: 31.3
Samples: 90
Max TPM: 91.3
Min TPM: 11.1
M2_1
91.3
M2_2
81.9
M2_3
75.5
M2_4
74.2
M2_5
66.4
M2_6
62.2
M2_7
54.6
M2_8
50.9
M2_9
50.2
M2_10
50.1
M2_11
48.5
M2_12
46.1
M2_13
45.8
M2_14
45.3
M2_15
44.1
M2_16
44.0
M2_17
43.9
M2_18
42.9
M2_19
41.2
M2_20
40.9
M2_21
40.6
M2_22
39.5
M2_23
37.4
M2_24
37.3
M2_25
37.2
M2_26
35.6
M2_27
35.1
M2_28
34.2
M2_29
34.2
M2_30
33.3
M2_31
32.6
M2_32
32.1
M2_33
31.9
M2_34
30.6
M2_35
30.1
M2_36
30.0
M2_37
29.9
M2_38
29.8
M2_39
28.3
M2_40
28.2
M2_41
28.1
M2_42
27.9
M2_43
27.9
M2_44
27.7
M2_45
27.4
M2_46
26.9
M2_47
26.9
M2_48
26.5
M2_49
25.9
M2_50
25.2
M2_51
25.1
M2_52
24.5
M2_53
24.2
M2_54
24.1
M2_55
24.1
M2_56
24.0
M2_57
23.9
M2_58
23.6
M2_59
23.6
M2_60
23.2
M2_61
22.9
M2_62
22.5
M2_63
22.4
M2_64
21.5
M2_65
21.2
M2_66
21.1
M2_67
21.1
M2_68
21.0
M2_69
20.6
M2_70
20.5
M2_71
20.4
M2_72
19.8
M2_73
19.5
M2_74
18.8
M2_75
18.7
M2_76
18.7
M2_77
18.0
M2_78
17.6
M2_79
16.8
M2_80
16.7
M2_81
16.1
M2_82
15.8
M2_83
15.2
M2_84
15.2
M2_85
14.9
M2_86
14.0
M2_87
13.7
M2_88
13.3
M2_89
11.3
M2_90
11.1
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