A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.8
nTPM
Monaco:
266.1
nTPM
Schmiedel:
23.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.8
HPA sample
nTPM
Memory B-cell nTPM: 13.5
Samples: 6
Max nTPM: 25.9
Min nTPM: 5.4
P10809_1017
12.5
P10809_1025
16.6
P10809_1044
25.9
P10809_1063
8.3
P10809_1092
12.2
P10809_1105
5.4
Naive B-cell nTPM: 16.8
Samples: 6
Max nTPM: 38.0
Min nTPM: 1.9
P10809_1011
16.6
P10809_1029
15.7
P10809_1048
38.0
P10809_1067
1.9
P10809_1091
20.1
P10809_1104
8.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
266.1
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 58.2
Samples: 4
Max nTPM: 103.8
Min nTPM: 37.1
RHH5310_R3677
37.1
RHH5218_R3590
52.4
RHH5247_R3619
39.3
RHH5276_R3648
103.8
Naive B-cell nTPM: 57.4
Samples: 4
Max nTPM: 81.2
Min nTPM: 5.3
RHH5308_R3675
81.2
RHH5216_R3588
5.3
RHH5245_R3617
67.0
RHH5274_R3646
76.2
Non-switched memory B-cell nTPM: 57.2
Samples: 4
Max nTPM: 91.9
Min nTPM: 11.7
RHH5309_R3676
60.8
RHH5217_R3589
11.7
RHH5246_R3618
64.5
RHH5275_R3647
91.9
Plasmablast nTPM: 266.2
Samples: 4
Max nTPM: 443.6
Min nTPM: 22.2
RHH5312_R3679
22.2
RHH5220_R3592
443.6
RHH5249_R3621
306.1
RHH5278_R3650
292.7
Switched memory B-cell nTPM: 57.4
Samples: 4
Max nTPM: 115.7
Min nTPM: 1.6
RHH5311_R3678
1.6
RHH5219_R3591
110.0
RHH5248_R3620
2.2
RHH5277_R3649
115.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.3
Schmiedel sample id
TPM
Naive B-cell TPM: 23.3
Samples: 91
Max TPM: 47.5
Min TPM: 2.8
B_CELL_NAIVE_1
47.5
B_CELL_NAIVE_2
39.3
B_CELL_NAIVE_3
38.2
B_CELL_NAIVE_4
38.1
B_CELL_NAIVE_5
38.0
B_CELL_NAIVE_6
37.4
B_CELL_NAIVE_7
37.2
B_CELL_NAIVE_8
36.8
B_CELL_NAIVE_9
36.3
B_CELL_NAIVE_10
36.2
B_CELL_NAIVE_11
35.9
B_CELL_NAIVE_12
35.4
B_CELL_NAIVE_13
35.1
B_CELL_NAIVE_14
35.0
B_CELL_NAIVE_15
34.9
B_CELL_NAIVE_16
34.6
B_CELL_NAIVE_17
34.5
B_CELL_NAIVE_18
34.5
B_CELL_NAIVE_19
33.7
B_CELL_NAIVE_20
32.9
B_CELL_NAIVE_21
31.6
B_CELL_NAIVE_22
31.0
B_CELL_NAIVE_23
30.5
B_CELL_NAIVE_24
30.3
B_CELL_NAIVE_25
29.9
B_CELL_NAIVE_26
29.9
B_CELL_NAIVE_27
29.6
B_CELL_NAIVE_28
28.9
B_CELL_NAIVE_29
28.6
B_CELL_NAIVE_30
28.5
B_CELL_NAIVE_31
28.1
B_CELL_NAIVE_32
27.4
B_CELL_NAIVE_33
27.3
B_CELL_NAIVE_34
27.1
B_CELL_NAIVE_35
27.0
B_CELL_NAIVE_36
26.8
B_CELL_NAIVE_37
26.0
B_CELL_NAIVE_38
26.0
B_CELL_NAIVE_39
24.9
B_CELL_NAIVE_40
24.9
B_CELL_NAIVE_41
24.8
B_CELL_NAIVE_42
24.8
B_CELL_NAIVE_43
24.7
B_CELL_NAIVE_44
24.5
B_CELL_NAIVE_45
24.5
B_CELL_NAIVE_46
24.3
B_CELL_NAIVE_47
24.0
B_CELL_NAIVE_48
23.7
B_CELL_NAIVE_49
22.7
B_CELL_NAIVE_50
22.2
B_CELL_NAIVE_51
22.0
B_CELL_NAIVE_52
22.0
B_CELL_NAIVE_53
21.7
B_CELL_NAIVE_54
21.6
B_CELL_NAIVE_55
21.5
B_CELL_NAIVE_56
20.9
B_CELL_NAIVE_57
20.5
B_CELL_NAIVE_58
19.8
B_CELL_NAIVE_59
19.4
B_CELL_NAIVE_60
18.8
B_CELL_NAIVE_61
18.8
B_CELL_NAIVE_62
18.8
B_CELL_NAIVE_63
18.4
B_CELL_NAIVE_64
18.0
B_CELL_NAIVE_65
17.8
B_CELL_NAIVE_66
17.5
B_CELL_NAIVE_67
16.7
B_CELL_NAIVE_68
16.3
B_CELL_NAIVE_69
15.9
B_CELL_NAIVE_70
15.8
B_CELL_NAIVE_71
15.2
B_CELL_NAIVE_72
14.6
B_CELL_NAIVE_73
14.3
B_CELL_NAIVE_74
14.2
B_CELL_NAIVE_75
13.6
B_CELL_NAIVE_76
13.6
B_CELL_NAIVE_77
12.7
B_CELL_NAIVE_78
12.5
B_CELL_NAIVE_79
10.8
B_CELL_NAIVE_80
10.7
B_CELL_NAIVE_81
9.5
B_CELL_NAIVE_82
9.0
B_CELL_NAIVE_83
7.9
B_CELL_NAIVE_84
7.8
B_CELL_NAIVE_85
7.1
B_CELL_NAIVE_86
5.9
B_CELL_NAIVE_87
5.4
B_CELL_NAIVE_88
3.8
B_CELL_NAIVE_89
3.3
B_CELL_NAIVE_90
3.2
B_CELL_NAIVE_91
2.8
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