A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.5
nTPM
Monaco:
137.0
nTPM
Schmiedel:
92.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.5
HPA sample
nTPM
NK-cell nTPM: 26.5
Samples: 6
Max nTPM: 47.1
Min nTPM: 15.6
P10809_1013
47.1
P10809_1033
15.6
P10809_1052
16.9
P10809_1071
19.1
P10809_1093
33.4
P10809_1103
27.2
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
137.0
Monaco sample
nTPM
NK-cell nTPM: 137.0
Samples: 4
Max nTPM: 198.9
Min nTPM: 37.1
RHH5316_R3683
198.9
RHH5224_R3596
37.1
RHH5253_R3625
172.2
RHH5282_R3654
139.9
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
92.6
Schmiedel sample id
TPM
NK-cell TPM: 92.6
Samples: 90
Max TPM: 177.0
Min TPM: 21.8
NK_1
177.0
NK_2
176.8
NK_3
174.0
NK_4
171.6
NK_5
171.5
NK_6
171.4
NK_7
168.4
NK_8
166.9
NK_9
158.1
NK_10
150.6
NK_11
149.8
NK_12
137.5
NK_13
137.0
NK_14
136.2
NK_15
134.5
NK_16
129.0
NK_17
128.0
NK_18
126.9
NK_19
125.9
NK_20
125.9
NK_21
125.2
NK_22
122.3
NK_23
121.8
NK_24
121.7
NK_25
120.9
NK_26
120.8
NK_27
120.5
NK_28
119.0
NK_29
111.6
NK_30
110.0
NK_31
106.9
NK_32
106.5
NK_33
106.4
NK_34
105.8
NK_35
105.8
NK_36
104.7
NK_37
102.5
NK_38
97.5
NK_39
97.3
NK_40
97.2
NK_41
94.8
NK_42
93.8
NK_43
87.4
NK_44
87.2
NK_45
86.3
NK_46
85.6
NK_47
85.5
NK_48
84.3
NK_49
83.8
NK_50
82.2
NK_51
80.7
NK_52
78.3
NK_53
76.4
NK_54
75.8
NK_55
74.7
NK_56
74.4
NK_57
73.8
NK_58
72.7
NK_59
71.4
NK_60
70.4
NK_61
69.7
NK_62
69.4
NK_63
67.6
NK_64
67.4
NK_65
66.2
NK_66
66.1
NK_67
65.7
NK_68
62.6
NK_69
61.0
NK_70
58.4
NK_71
57.5
NK_72
57.2
NK_73
56.8
NK_74
51.7
NK_75
51.7
NK_76
50.8
NK_77
49.3
NK_78
47.5
NK_79
47.3
NK_80
41.1
NK_81
40.3
NK_82
38.4
NK_83
38.2
NK_84
35.8
NK_85
35.4
NK_86
27.4
NK_87
25.2
NK_88
23.8
NK_89
21.9
NK_90
21.8
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