A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.2
nTPM
Monaco:
103.5
nTPM
Schmiedel:
43.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.2
HPA sample
nTPM
Classical monocyte nTPM: 21.5
Samples: 6
Max nTPM: 60.3
Min nTPM: 6.5
P10809_1003
16.3
P10809_1020
17.4
P10809_1039
60.3
P10809_1058
6.6
P10809_1080
6.5
P10809_1107
22.2
Intermediate monocyte nTPM: 14.2
Samples: 6
Max nTPM: 37.6
Min nTPM: 0.0
P10809_1004
30.8
P10809_1023
9.6
P10809_1042
2.4
P10809_1061
0.0
P10809_1081
4.5
P10809_1108
37.6
Non-classical monocyte nTPM: 23.2
Samples: 5
Max nTPM: 54.5
Min nTPM: 4.9
P10809_1005
54.5
P10809_1053
4.9
P10809_1072
17.9
P10809_1082
8.1
P10809_1109
30.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
103.5
Monaco sample
nTPM
Classical monocyte nTPM: 103.5
Samples: 4
Max nTPM: 192.1
Min nTPM: 59.2
RHH5313_R3680
59.2
RHH5221_R3593
192.1
RHH5250_R3622
68.8
RHH5279_R3651
93.8
Intermediate monocyte nTPM: 88.7
Samples: 4
Max nTPM: 121.8
Min nTPM: 29.0
RHH5314_R3681
93.0
RHH5222_R3594
121.8
RHH5251_R3623
110.9
RHH5280_R3652
29.0
Non-classical monocyte nTPM: 94.8
Samples: 4
Max nTPM: 146.6
Min nTPM: 31.1
RHH5315_R3682
146.6
RHH5223_R3595
87.9
RHH5252_R3624
113.7
RHH5281_R3653
31.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.9
Schmiedel sample id
TPM
Classical monocyte TPM: 43.9
Samples: 91
Max TPM: 68.7
Min TPM: 18.5
MONOCYTES_1
68.7
MONOCYTES_2
66.9
MONOCYTES_3
66.7
MONOCYTES_4
64.6
MONOCYTES_5
63.7
MONOCYTES_6
62.8
MONOCYTES_7
62.5
MONOCYTES_8
62.0
MONOCYTES_9
61.8
MONOCYTES_10
61.2
MONOCYTES_11
61.0
MONOCYTES_12
60.1
MONOCYTES_13
60.0
MONOCYTES_14
59.3
MONOCYTES_15
59.2
MONOCYTES_16
58.4
MONOCYTES_17
58.4
MONOCYTES_18
58.2
MONOCYTES_19
58.1
MONOCYTES_20
57.9
MONOCYTES_21
57.4
MONOCYTES_22
57.0
MONOCYTES_23
56.5
MONOCYTES_24
56.0
MONOCYTES_25
55.9
MONOCYTES_26
55.5
MONOCYTES_27
55.2
MONOCYTES_28
54.9
MONOCYTES_29
54.0
MONOCYTES_30
53.5
MONOCYTES_31
53.5
MONOCYTES_32
53.4
MONOCYTES_33
50.8
MONOCYTES_34
50.5
MONOCYTES_35
48.6
MONOCYTES_36
47.9
MONOCYTES_37
47.3
MONOCYTES_38
47.1
MONOCYTES_39
47.0
MONOCYTES_40
46.8
MONOCYTES_41
46.1
MONOCYTES_42
45.7
MONOCYTES_43
45.1
MONOCYTES_44
44.8
MONOCYTES_45
44.2
MONOCYTES_46
44.0
MONOCYTES_47
43.6
MONOCYTES_48
43.3
MONOCYTES_49
41.2
MONOCYTES_50
41.2
MONOCYTES_51
40.7
MONOCYTES_52
40.6
MONOCYTES_53
40.2
MONOCYTES_54
39.7
MONOCYTES_55
39.0
MONOCYTES_56
39.0
MONOCYTES_57
38.6
MONOCYTES_58
38.4
MONOCYTES_59
38.2
MONOCYTES_60
37.4
MONOCYTES_61
37.2
MONOCYTES_62
36.4
MONOCYTES_63
35.7
MONOCYTES_64
34.6
MONOCYTES_65
34.5
MONOCYTES_66
34.1
MONOCYTES_67
34.1
MONOCYTES_68
33.6
MONOCYTES_69
33.3
MONOCYTES_70
32.0
MONOCYTES_71
31.7
MONOCYTES_72
31.6
MONOCYTES_73
31.5
MONOCYTES_74
30.7
MONOCYTES_75
30.3
MONOCYTES_76
29.9
MONOCYTES_77
28.4
MONOCYTES_78
28.3
MONOCYTES_79
27.1
MONOCYTES_80
26.7
MONOCYTES_81
25.1
MONOCYTES_82
24.7
MONOCYTES_83
23.9
MONOCYTES_84
23.1
MONOCYTES_85
22.3
MONOCYTES_86
21.2
MONOCYTES_87
21.1
MONOCYTES_88
21.1
MONOCYTES_89
20.8
MONOCYTES_90
20.7
MONOCYTES_91
18.5
Show allShow less
Non-classical monocyte TPM: 26.5
Samples: 90
Max TPM: 49.3
Min TPM: 4.0
M2_1
49.3
M2_2
46.8
M2_3
43.5
M2_4
42.6
M2_5
42.3
M2_6
42.1
M2_7
41.9
M2_8
41.7
M2_9
41.2
M2_10
41.1
M2_11
40.9
M2_12
40.4
M2_13
39.7
M2_14
39.7
M2_15
39.1
M2_16
38.8
M2_17
37.1
M2_18
36.9
M2_19
36.3
M2_20
35.9
M2_21
35.7
M2_22
35.7
M2_23
34.5
M2_24
34.1
M2_25
34.1
M2_26
34.1
M2_27
33.8
M2_28
33.7
M2_29
32.3
M2_30
32.0
M2_31
31.9
M2_32
31.7
M2_33
31.5
M2_34
30.8
M2_35
30.7
M2_36
30.1
M2_37
29.9
M2_38
29.8
M2_39
28.9
M2_40
28.8
M2_41
28.0
M2_42
28.0
M2_43
27.9
M2_44
27.7
M2_45
27.7
M2_46
27.6
M2_47
26.9
M2_48
26.6
M2_49
26.3
M2_50
26.1
M2_51
26.0
M2_52
25.4
M2_53
25.3
M2_54
25.2
M2_55
24.9
M2_56
24.8
M2_57
24.6
M2_58
22.3
M2_59
22.2
M2_60
21.7
M2_61
21.4
M2_62
20.6
M2_63
20.1
M2_64
20.1
M2_65
19.5
M2_66
18.2
M2_67
17.6
M2_68
17.1
M2_69
17.0
M2_70
15.9
M2_71
15.6
M2_72
15.6
M2_73
15.4
M2_74
15.4
M2_75
15.3
M2_76
13.5
M2_77
12.9
M2_78
12.5
M2_79
12.5
M2_80
11.4
M2_81
11.2
M2_82
11.0
M2_83
10.7
M2_84
10.5
M2_85
10.3
M2_86
7.6
M2_87
7.5
M2_88
7.3
M2_89
5.1
M2_90
4.0
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
