A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
60.8
nTPM
Monaco:
74.4
nTPM
Schmiedel:
81.3
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.8
HPA sample
nTPM
Memory B-cell nTPM: 60.8
Samples: 6
Max nTPM: 128.7
Min nTPM: 28.3
P10809_1017
45.7
P10809_1025
44.9
P10809_1044
128.7
P10809_1063
52.0
P10809_1092
65.0
P10809_1105
28.3
Naive B-cell nTPM: 45.8
Samples: 6
Max nTPM: 86.1
Min nTPM: 24.3
P10809_1011
36.0
P10809_1029
32.2
P10809_1048
86.1
P10809_1067
24.3
P10809_1091
60.2
P10809_1104
36.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 37.3
Samples: 4
Max nTPM: 46.9
Min nTPM: 24.6
RHH5310_R3677
37.1
RHH5218_R3590
24.6
RHH5247_R3619
46.9
RHH5276_R3648
40.6
Naive B-cell nTPM: 36.1
Samples: 4
Max nTPM: 53.0
Min nTPM: 18.5
RHH5308_R3675
53.0
RHH5216_R3588
27.0
RHH5245_R3617
18.5
RHH5274_R3646
45.8
Non-switched memory B-cell nTPM: 74.4
Samples: 4
Max nTPM: 80.2
Min nTPM: 65.6
RHH5309_R3676
71.9
RHH5217_R3589
65.6
RHH5246_R3618
80.0
RHH5275_R3647
80.2
Plasmablast nTPM: 38.7
Samples: 4
Max nTPM: 53.5
Min nTPM: 19.9
RHH5312_R3679
19.9
RHH5220_R3592
53.5
RHH5249_R3621
49.8
RHH5278_R3650
31.4
Switched memory B-cell nTPM: 50.7
Samples: 4
Max nTPM: 60.3
Min nTPM: 40.5
RHH5311_R3678
40.5
RHH5219_R3591
60.3
RHH5248_R3620
43.4
RHH5277_R3649
58.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.3
Schmiedel sample id
TPM
Naive B-cell TPM: 81.3
Samples: 91
Max TPM: 115.1
Min TPM: 50.2
B_CELL_NAIVE_1
115.1
B_CELL_NAIVE_2
109.7
B_CELL_NAIVE_3
106.1
B_CELL_NAIVE_4
101.5
B_CELL_NAIVE_5
100.2
B_CELL_NAIVE_6
99.8
B_CELL_NAIVE_7
99.3
B_CELL_NAIVE_8
99.2
B_CELL_NAIVE_9
98.6
B_CELL_NAIVE_10
98.4
B_CELL_NAIVE_11
98.3
B_CELL_NAIVE_12
97.1
B_CELL_NAIVE_13
97.0
B_CELL_NAIVE_14
96.0
B_CELL_NAIVE_15
95.8
B_CELL_NAIVE_16
95.7
B_CELL_NAIVE_17
95.1
B_CELL_NAIVE_18
93.4
B_CELL_NAIVE_19
93.1
B_CELL_NAIVE_20
91.3
B_CELL_NAIVE_21
91.0
B_CELL_NAIVE_22
90.5
B_CELL_NAIVE_23
90.0
B_CELL_NAIVE_24
89.1
B_CELL_NAIVE_25
89.0
B_CELL_NAIVE_26
88.7
B_CELL_NAIVE_27
88.6
B_CELL_NAIVE_28
88.2
B_CELL_NAIVE_29
88.1
B_CELL_NAIVE_30
87.6
B_CELL_NAIVE_31
87.4
B_CELL_NAIVE_32
86.8
B_CELL_NAIVE_33
86.7
B_CELL_NAIVE_34
85.9
B_CELL_NAIVE_35
85.2
B_CELL_NAIVE_36
84.8
B_CELL_NAIVE_37
84.3
B_CELL_NAIVE_38
83.9
B_CELL_NAIVE_39
83.8
B_CELL_NAIVE_40
83.7
B_CELL_NAIVE_41
83.5
B_CELL_NAIVE_42
83.3
B_CELL_NAIVE_43
82.3
B_CELL_NAIVE_44
82.2
B_CELL_NAIVE_45
82.1
B_CELL_NAIVE_46
81.7
B_CELL_NAIVE_47
81.7
B_CELL_NAIVE_48
81.6
B_CELL_NAIVE_49
79.7
B_CELL_NAIVE_50
79.5
B_CELL_NAIVE_51
78.6
B_CELL_NAIVE_52
77.4
B_CELL_NAIVE_53
76.8
B_CELL_NAIVE_54
75.2
B_CELL_NAIVE_55
74.9
B_CELL_NAIVE_56
74.9
B_CELL_NAIVE_57
74.5
B_CELL_NAIVE_58
74.2
B_CELL_NAIVE_59
74.2
B_CELL_NAIVE_60
74.1
B_CELL_NAIVE_61
73.6
B_CELL_NAIVE_62
73.0
B_CELL_NAIVE_63
72.7
B_CELL_NAIVE_64
72.6
B_CELL_NAIVE_65
72.5
B_CELL_NAIVE_66
72.3
B_CELL_NAIVE_67
71.8
B_CELL_NAIVE_68
71.5
B_CELL_NAIVE_69
71.1
B_CELL_NAIVE_70
70.8
B_CELL_NAIVE_71
70.7
B_CELL_NAIVE_72
70.6
B_CELL_NAIVE_73
70.3
B_CELL_NAIVE_74
70.3
B_CELL_NAIVE_75
69.5
B_CELL_NAIVE_76
68.9
B_CELL_NAIVE_77
68.7
B_CELL_NAIVE_78
68.7
B_CELL_NAIVE_79
68.7
B_CELL_NAIVE_80
68.5
B_CELL_NAIVE_81
67.7
B_CELL_NAIVE_82
67.1
B_CELL_NAIVE_83
67.0
B_CELL_NAIVE_84
66.9
B_CELL_NAIVE_85
65.2
B_CELL_NAIVE_86
63.4
B_CELL_NAIVE_87
62.8
B_CELL_NAIVE_88
61.9
B_CELL_NAIVE_89
59.3
B_CELL_NAIVE_90
50.5
B_CELL_NAIVE_91
50.2
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The Human Protein Atlas project is funded
