A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
26.8
nTPM
Monaco:
27.9
nTPM
Schmiedel:
86.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.8
HPA sample
nTPM
NK-cell nTPM: 26.8
Samples: 6
Max nTPM: 44.6
Min nTPM: 11.3
P10809_1013
33.5
P10809_1033
21.5
P10809_1052
26.6
P10809_1071
44.6
P10809_1093
23.2
P10809_1103
11.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.9
Monaco sample
nTPM
NK-cell nTPM: 27.9
Samples: 4
Max nTPM: 39.0
Min nTPM: 18.8
RHH5316_R3683
26.0
RHH5224_R3596
39.0
RHH5253_R3625
18.8
RHH5282_R3654
27.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.9
Schmiedel sample id
TPM
NK-cell TPM: 86.9
Samples: 90
Max TPM: 110.9
Min TPM: 57.5
NK_1
110.9
NK_2
107.0
NK_3
107.0
NK_4
106.5
NK_5
105.3
NK_6
104.8
NK_7
104.6
NK_8
102.7
NK_9
102.1
NK_10
101.0
NK_11
100.9
NK_12
100.0
NK_13
99.9
NK_14
99.0
NK_15
98.8
NK_16
97.2
NK_17
97.0
NK_18
95.9
NK_19
95.6
NK_20
95.3
NK_21
94.9
NK_22
94.6
NK_23
94.5
NK_24
94.1
NK_25
94.1
NK_26
94.1
NK_27
94.0
NK_28
93.7
NK_29
92.6
NK_30
92.3
NK_31
92.0
NK_32
92.0
NK_33
91.3
NK_34
90.7
NK_35
90.5
NK_36
90.2
NK_37
89.9
NK_38
89.6
NK_39
89.6
NK_40
89.1
NK_41
88.7
NK_42
88.1
NK_43
88.1
NK_44
87.9
NK_45
87.9
NK_46
87.2
NK_47
86.9
NK_48
86.6
NK_49
86.1
NK_50
85.8
NK_51
85.2
NK_52
84.5
NK_53
84.3
NK_54
84.2
NK_55
83.4
NK_56
83.3
NK_57
83.2
NK_58
82.6
NK_59
82.2
NK_60
81.9
NK_61
81.3
NK_62
80.5
NK_63
80.5
NK_64
80.2
NK_65
80.1
NK_66
79.9
NK_67
79.1
NK_68
78.9
NK_69
78.5
NK_70
77.8
NK_71
77.6
NK_72
77.2
NK_73
77.0
NK_74
76.9
NK_75
76.1
NK_76
75.8
NK_77
75.4
NK_78
75.0
NK_79
74.6
NK_80
74.2
NK_81
74.0
NK_82
73.1
NK_83
72.2
NK_84
71.1
NK_85
71.0
NK_86
70.0
NK_87
68.5
NK_88
61.6
NK_89
61.4
NK_90
57.5
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