A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
23.8
nTPM
Monaco:
33.7
nTPM
Schmiedel:
55.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.8
HPA sample
nTPM
Classical monocyte nTPM: 19.6
Samples: 6
Max nTPM: 25.4
Min nTPM: 15.0
P10809_1003
15.9
P10809_1020
15.0
P10809_1039
25.4
P10809_1058
24.8
P10809_1080
18.0
P10809_1107
18.7
Intermediate monocyte nTPM: 23.8
Samples: 6
Max nTPM: 52.9
Min nTPM: 11.7
P10809_1004
17.2
P10809_1023
11.7
P10809_1042
52.9
P10809_1061
21.6
P10809_1081
24.3
P10809_1108
14.9
Non-classical monocyte nTPM: 15.2
Samples: 5
Max nTPM: 21.8
Min nTPM: 6.7
P10809_1005
19.1
P10809_1053
14.1
P10809_1072
6.7
P10809_1082
14.2
P10809_1109
21.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.7
Monaco sample
nTPM
Classical monocyte nTPM: 33.7
Samples: 4
Max nTPM: 48.8
Min nTPM: 25.6
RHH5313_R3680
27.8
RHH5221_R3593
25.6
RHH5250_R3622
48.8
RHH5279_R3651
32.6
Intermediate monocyte nTPM: 27.3
Samples: 4
Max nTPM: 40.4
Min nTPM: 18.1
RHH5314_R3681
27.0
RHH5222_R3594
23.6
RHH5251_R3623
40.4
RHH5280_R3652
18.1
Non-classical monocyte nTPM: 26.2
Samples: 4
Max nTPM: 36.3
Min nTPM: 8.7
RHH5315_R3682
23.6
RHH5223_R3595
8.7
RHH5252_R3624
36.1
RHH5281_R3653
36.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.5
Schmiedel sample id
TPM
Classical monocyte TPM: 50.1
Samples: 91
Max TPM: 70.0
Min TPM: 37.6
MONOCYTES_1
70.0
MONOCYTES_2
69.0
MONOCYTES_3
64.3
MONOCYTES_4
63.9
MONOCYTES_5
63.0
MONOCYTES_6
62.2
MONOCYTES_7
61.3
MONOCYTES_8
59.5
MONOCYTES_9
58.7
MONOCYTES_10
58.7
MONOCYTES_11
58.7
MONOCYTES_12
58.2
MONOCYTES_13
57.5
MONOCYTES_14
57.2
MONOCYTES_15
56.9
MONOCYTES_16
56.2
MONOCYTES_17
55.9
MONOCYTES_18
55.6
MONOCYTES_19
55.5
MONOCYTES_20
55.3
MONOCYTES_21
55.3
MONOCYTES_22
54.8
MONOCYTES_23
54.1
MONOCYTES_24
54.0
MONOCYTES_25
54.0
MONOCYTES_26
53.9
MONOCYTES_27
53.9
MONOCYTES_28
53.8
MONOCYTES_29
53.4
MONOCYTES_30
53.1
MONOCYTES_31
53.0
MONOCYTES_32
53.0
MONOCYTES_33
53.0
MONOCYTES_34
52.9
MONOCYTES_35
52.9
MONOCYTES_36
52.6
MONOCYTES_37
52.5
MONOCYTES_38
52.1
MONOCYTES_39
51.9
MONOCYTES_40
51.1
MONOCYTES_41
51.0
MONOCYTES_42
51.0
MONOCYTES_43
50.6
MONOCYTES_44
50.5
MONOCYTES_45
50.5
MONOCYTES_46
49.8
MONOCYTES_47
49.7
MONOCYTES_48
49.4
MONOCYTES_49
49.4
MONOCYTES_50
49.2
MONOCYTES_51
49.1
MONOCYTES_52
48.5
MONOCYTES_53
48.3
MONOCYTES_54
48.0
MONOCYTES_55
47.2
MONOCYTES_56
47.1
MONOCYTES_57
47.1
MONOCYTES_58
47.0
MONOCYTES_59
46.9
MONOCYTES_60
46.9
MONOCYTES_61
46.6
MONOCYTES_62
46.0
MONOCYTES_63
45.9
MONOCYTES_64
45.9
MONOCYTES_65
45.8
MONOCYTES_66
45.4
MONOCYTES_67
45.4
MONOCYTES_68
44.7
MONOCYTES_69
44.7
MONOCYTES_70
44.7
MONOCYTES_71
44.3
MONOCYTES_72
44.1
MONOCYTES_73
43.7
MONOCYTES_74
43.5
MONOCYTES_75
43.5
MONOCYTES_76
42.6
MONOCYTES_77
42.4
MONOCYTES_78
42.2
MONOCYTES_79
41.9
MONOCYTES_80
41.9
MONOCYTES_81
41.8
MONOCYTES_82
41.7
MONOCYTES_83
41.6
MONOCYTES_84
41.3
MONOCYTES_85
39.9
MONOCYTES_86
39.5
MONOCYTES_87
39.1
MONOCYTES_88
39.0
MONOCYTES_89
38.3
MONOCYTES_90
38.1
MONOCYTES_91
37.6
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Non-classical monocyte TPM: 55.5
Samples: 90
Max TPM: 75.2
Min TPM: 36.9
M2_1
75.2
M2_2
74.0
M2_3
73.5
M2_4
73.4
M2_5
73.0
M2_6
70.0
M2_7
69.7
M2_8
66.7
M2_9
65.8
M2_10
65.4
M2_11
64.3
M2_12
64.3
M2_13
64.0
M2_14
63.2
M2_15
62.5
M2_16
62.3
M2_17
62.2
M2_18
61.9
M2_19
61.8
M2_20
61.6
M2_21
61.4
M2_22
61.3
M2_23
60.1
M2_24
59.5
M2_25
59.3
M2_26
59.2
M2_27
59.0
M2_28
58.6
M2_29
58.4
M2_30
58.3
M2_31
58.3
M2_32
58.2
M2_33
58.1
M2_34
57.9
M2_35
56.9
M2_36
56.6
M2_37
56.6
M2_38
56.4
M2_39
56.4
M2_40
55.7
M2_41
55.6
M2_42
55.3
M2_43
55.3
M2_44
55.0
M2_45
54.9
M2_46
54.4
M2_47
54.3
M2_48
54.2
M2_49
54.2
M2_50
54.1
M2_51
54.0
M2_52
53.8
M2_53
53.4
M2_54
53.3
M2_55
53.1
M2_56
53.0
M2_57
52.9
M2_58
52.8
M2_59
52.2
M2_60
52.1
M2_61
51.8
M2_62
51.1
M2_63
51.1
M2_64
51.1
M2_65
50.9
M2_66
50.7
M2_67
50.5
M2_68
50.4
M2_69
50.1
M2_70
50.1
M2_71
49.1
M2_72
49.0
M2_73
48.3
M2_74
48.3
M2_75
48.3
M2_76
47.7
M2_77
47.7
M2_78
46.7
M2_79
46.3
M2_80
46.2
M2_81
46.1
M2_82
45.6
M2_83
45.6
M2_84
45.3
M2_85
44.8
M2_86
43.0
M2_87
42.2
M2_88
40.5
M2_89
37.8
M2_90
36.9
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