On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
26.2
nTPM
HPA Brain:
240.3
nTPM
GTEx:
26.2
nTPM
FANTOM5:
78.7
Scaled Tags Per Million
Mouse:
109.4
nTPM
Rat:
85.6
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
240.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 212.7
2586
Male, age 75, left hemisphere
264.5
2219
Male, age 76, both hemispheres
237.7
2411
Female, age 72, unknown
226.3
1827
Male, age 72, unknown
210.0
1870
Female, age 42, unknown
207.8
2666
Male, age 74, left hemisphere
205.9
2828
Female, age 72, unknown
198.1
2019
Male, age 18, unknown
198.0
1830
Male, age 51, unknown
192.0
1833
Male, age 53, unknown
187.3
Dorsal raphe nucleus nTPM: 221.0
2298
Female, age 72, unknown
248.2
2016
Female, age 72, unknown
240.1
2047
Male, age 72, unknown
227.5
2750
Male, age 76, both hemispheres
204.4
1828
Male, age 53, unknown
185.1
Inferior colliculus nTPM: 240.3
2849
Male, age 72, unknown
257.9
1890
Male, age 53, unknown
249.5
1848
Female, age 42, unknown
234.4
2097
Female, age 72, unknown
219.3
Median raphe nucleus nTPM: 192.0
2220
Male, age 76, midline
192.0
Periaquaductal grey, anterior nTPM: 204.7
1795
Male, age 51, unknown
249.7
1947
Male, age 18, unknown
202.1
2502
Female, age 75, unknown
162.3
Periaquaductal grey, dorsal nTPM: 224.6
2464
Female, age 72, unknown
288.2
1840
Male, age 53, unknown
235.8
2850
Male, age 76, both hemispheres
195.9
1831
Male, age 72, unknown
178.5
Periaquaductal grey, lateral nTPM: 196.7
2140
Male, age 76, both hemispheres
212.5
2053
Male, age 18, unknown
194.2
2272
Male, age 74, both hemispheres
183.3
Pretectal area nTPM: 230.5
1816
Male, age 51, unknown
271.7
2007
Male, age 72, unknown
264.1
2316
Male, age 76, right hemisphere
256.2
1815
Male, age 53, unknown
248.8
1944
Female, age 72, unknown
241.4
2825
Male, age 18, unknown
218.3
2224
Female, age 72, unknown
217.0
1817
Female, age 42, unknown
215.4
2407
Male, age 75, both hemispheres
207.9
2667
Female, age 75, unknown
205.5
2273
Male, age 74, both hemispheres
189.5
Red nucleus nTPM: 210.6
2725
Female, age 75, unknown
266.7
2769
Male, age 72, unknown
242.6
2227
Male, age 72, unknown
222.4
2503
Female, age 72, unknown
217.1
2588
Male, age 74, left hemisphere
213.2
2823
Male, age 76, right hemisphere
211.4
1904
Male, age 53, unknown
209.6
1865
Male, age 51, unknown
199.4
2584
Male, age 75, left hemisphere
195.4
1954
Female, age 42, unknown
189.0
2785
Male, age 18, unknown
187.3
1821
Female, age 72, unknown
172.9
Substantia nigra nTPM: 209.0
2665
Male, age 74, both hemispheres
243.4
2590
Female, age 75, unknown
231.1
1889
Female, age 72, unknown
224.2
1941
Male, age 53, unknown
219.4
1916
Female, age 42, unknown
212.6
2699
Male, age 18, unknown
212.0
2583
Male, age 75, right hemisphere
208.4
2409
Female, age 72, unknown
187.6
1851
Male, age 51, unknown
178.9
2241
Male, age 72, unknown
172.2
Superior colliculus nTPM: 208.1
2261
Male, age 18, unknown
255.8
2664
Male, age 75, both hemispheres
247.7
2087
Female, age 72, unknown
234.0
2668
Female, age 75, unknown
201.8
1995
Male, age 72, unknown
196.5
1839
Male, age 51, unknown
195.7
1796
Male, age 53, unknown
193.8
1895
Male, age 76, right hemisphere
188.1
2587
Male, age 74, left hemisphere
186.2
1913
Female, age 42, unknown
180.9
Ventral tegmental area nTPM: 196.5
2021
Male, age 53, unknown
219.7
2410
Female, age 72, unknown
200.2
2218
Male, age 76, both hemispheres
199.3
2223
Female, age 72, unknown
190.9
1942
Male, age 51, unknown
189.2
1915
Female, age 42, unknown
179.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 26.2
Samples: 183
Max nTPM: 65.4
Min nTPM: 3.7
Std nTPM: 9.0
Median nTPM: 26.3
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
65.4
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
52.4
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
46.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
45.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
44.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
43.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
42.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
42.7
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
42.2
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
41.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
41.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
41.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
40.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
40.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
39.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
38.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
37.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
36.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
36.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
36.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
36.1
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
35.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
35.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
35.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
35.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
35.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
34.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
34.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
34.8
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
34.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
34.3
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
33.7
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
33.3
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
33.0
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
32.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
32.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
32.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
32.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
32.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
32.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
32.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
32.3
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
31.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
31.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
31.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
31.5
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
31.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
31.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
31.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
31.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
30.9
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
30.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
30.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
30.3
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
30.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
30.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
30.0
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
30.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
29.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
29.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
29.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
29.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
29.3
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
29.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
29.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
29.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
29.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
29.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
28.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
28.7
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
28.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
28.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
28.5
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
28.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
28.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
28.3
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
28.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
28.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
27.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
27.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
27.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
27.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
27.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
27.2
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
27.2
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
27.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
26.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
26.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
26.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
26.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
26.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
26.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
26.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
25.7
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
25.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
25.6
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
25.3
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
25.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
25.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
24.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
24.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
24.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
24.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
24.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
24.2
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
24.1
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
24.1
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
23.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
23.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
23.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
23.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
23.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
23.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
22.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
22.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
22.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
22.5
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
22.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
22.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
21.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
21.7
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
21.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
21.6
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
21.4
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
21.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
21.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
20.9
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
20.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
20.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
20.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
20.3
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
20.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
20.1
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
20.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
20.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
20.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
19.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
19.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
19.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
19.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
19.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
19.0
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
19.0
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
18.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
18.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
18.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
18.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
18.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
18.1
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
18.1
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
17.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
17.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
17.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
17.4
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
17.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
17.2
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
17.2
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
17.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
17.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
16.8
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
16.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
16.6
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
15.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
15.6
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
15.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
15.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
15.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
14.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
14.4
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
13.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
13.2
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
12.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
12.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
12.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
11.7
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
11.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
11.1
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
10.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
9.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
9.0
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
6.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
3.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 109.4
Samples: 4
Max nTPM: 117.1
Min nTPM: 99.7
Sample A
99.7
Sample B
106.9
Sample C
117.1
Sample D
113.8
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
85.6
Rat sample
Sample description
nTPM
Midbrain nTPM: 85.6
Samples: 4
Max nTPM: 89.3
Min nTPM: 80.9
Sample A
89.3
Sample A
86.5
Sample A
80.9
Sample A
85.8
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The Human Protein Atlas project is funded
