On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1440.2
nTPM
HPA Brain:
1043.3
nTPM
GTEx:
1440.2
nTPM
FANTOM5:
1038.9
Scaled Tags Per Million
Macaque:
632.3
nTPM
Mouse:
47.9
nTPM
Rat:
67.9
nTPM
Pig:
113.9
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
1975
Sample
Intensity
Spinal cord_01
1975
Spinal cord_02
3527
Spinal cord_03
2210
Spinal cord_04
ND
Spinal cord_05
1199
Spinal cord_06
2155
Spinal cord_07
1512
Spinal cord_08
1884
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1043.3
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 1027.2
2734
Male, age 80, both hemispheres
1152.0
2193
Male, age 75, both hemispheres
1026.0
2818
Female, age 79, both hemispheres
988.6
2819
Male, age 47, both hemispheres
942.2
Cervical spinal cord, central gray nTPM: 611.0
1981
Female, age 72, midline
834.2
2048
Male, age 55, midline
611.4
2816
Male, age 47, midline
578.6
2194
Female, age 79, both hemispheres
575.4
2565
Male, age 75, midline
455.5
Cervical spinal cord, dorsal horn nTPM: 759.7
2296
Male, age 66, both hemispheres
1308.2
2173
Female, age 72, unknown
1173.4
2069
Male, age 47, both hemispheres
768.1
1877
Male, age 55, unknown
578.3
2297
Male, age 75, both hemispheres
372.1
2721
Male, age 90, both hemispheres
358.3
Cervical spinal cord, ventral horn nTPM: 765.1
2068
Male, age 55, unknown
936.3
2098
Female, age 72, unknown
862.2
2480
Male, age 75, both hemispheres
725.2
2809
Male, age 90, both hemispheres
714.6
2820
Female, age 79, both hemispheres
676.7
2295
Male, age 66, both hemispheres
675.5
Dorsal funiculus (white matter) nTPM: 1043.3
2810
Male, age 90, both hemispheres
1410.5
2817
Male, age 47, both hemispheres
1011.4
2128
Male, age 75, both hemispheres
968.0
2064
Female, age 79, both hemispheres
943.5
2812
Male, age 66, both hemispheres
883.0
Lateral funiculus (white matter) nTPM: 1013.4
2099
Male, age 90, both hemispheres
1405.2
2094
Female, age 79, both hemispheres
1171.0
2192
Male, age 75, both hemispheres
826.8
2294
Male, age 66, both hemispheres
650.8
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1440.2
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 1440.2
Samples: 204
Max nTPM: 2855.3
Min nTPM: 374.3
Std nTPM: 430.6
Median nTPM: 1421.7
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
2855.3
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
2693.1
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
2682.3
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
2532.3
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
2448.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
2414.8
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
2385.3
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
2319.2
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
2302.8
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
2247.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
2244.0
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
2241.7
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
2225.3
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
2161.6
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
2110.2
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
2031.2
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
2008.5
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
2004.6
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
1996.2
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
1993.9
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
1954.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
1947.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
1942.3
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
1939.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
1919.4
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
1911.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
1876.9
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
1872.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
1872.2
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
1860.1
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
1847.7
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
1833.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
1815.2
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
1809.2
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
1782.6
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
1780.8
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
1777.1
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
1768.4
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
1768.1
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
1766.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
1762.6
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
1759.2
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
1726.1
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
1718.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
1706.9
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
1698.8
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
1695.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
1693.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
1687.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
1686.2
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
1682.0
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
1674.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
1672.1
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
1665.2
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
1661.0
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
1644.3
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
1636.8
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
1633.5
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
1625.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
1625.2
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
1620.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
1618.2
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
1616.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
1612.4
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
1610.4
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
1607.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
1599.0
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
1597.2
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
1593.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
1590.6
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
1579.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
1573.9
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
1573.5
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
1572.8
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
1568.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
1548.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
1547.4
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
1544.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
1541.5
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
1533.7
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
1529.2
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
1528.0
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
1522.1
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
1511.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
1505.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
1504.7
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
1499.9
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
1484.1
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
1484.1
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
1479.5
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
1470.5
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
1464.2
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
1460.9
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
1458.8
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
1457.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
1451.3
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
1450.2
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
1438.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
1434.0
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
1426.9
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
1424.9
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
1422.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
1421.4
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
1417.7
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
1417.1
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
1409.9
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
1407.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
1407.1
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
1391.7
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
1391.3
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
1389.2
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
1386.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
1378.9
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
1360.3
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
1353.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
1352.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
1347.9
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
1345.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
1344.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
1343.7
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
1331.6
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
1331.1
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
1330.9
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
1322.8
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
1321.8
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
1303.8
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
1294.3
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
1292.9
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
1291.0
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
1287.9
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
1286.8
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
1273.8
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
1268.2
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
1262.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
1260.9
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
1260.3
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
1258.3
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
1254.1
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
1254.1
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
1253.5
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
1238.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
1235.4
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
1229.7
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
1227.7
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
1225.5
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
1219.2
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
1204.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
1201.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
1162.4
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
1162.3
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
1158.8
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
1158.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
1155.8
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
1149.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
1148.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
1148.0
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
1147.0
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
1130.9
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
1117.1
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
1109.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
1106.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
1103.6
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
1102.0
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
1100.2
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
1099.2
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
1094.5
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
1071.4
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
1067.3
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
1067.3
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
1062.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
1057.5
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
1051.0
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
1048.5
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
1008.1
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
999.5
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
997.9
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
981.9
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
949.7
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
945.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
941.9
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
934.1
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
931.6
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
919.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
912.2
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
911.5
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
904.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
838.0
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
834.5
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
819.3
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
792.0
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
784.3
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
782.7
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
778.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
745.9
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
740.1
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
709.3
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
695.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
686.9
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
678.0
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
677.8
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
605.0
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
578.2
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
531.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
374.3
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
632.3
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 604.8
Samples: 2
Max nTPM: 670.9
Min nTPM: 538.8
Sample A
670.9
Sample B
538.8
Ventral spinal cord nTPM: 632.3
Samples: 1
Max nTPM: 632.3
Min nTPM: 632.3
Sample A
632.3
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
113.9
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 96.1
Samples: 4
Max nTPM: 106.9
Min nTPM: 89.9
Sample A
Female
94.6
Sample B
Female
106.9
Sample C
Male
89.9
Sample D
Male
92.8
Ventral spinal cord nTPM: 113.9
Samples: 4
Max nTPM: 134.1
Min nTPM: 89.9
Sample A
Female
117.5
Sample B
Female
114.0
Sample C
Male
89.9
Sample D
Male
134.1
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.9
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 48.0
Samples: 4
Max nTPM: 52.2
Min nTPM: 46.1
Sample A
47.3
Sample B
52.2
Sample C
46.1
Sample D
46.2
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
67.9
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 67.9
Samples: 4
Max nTPM: 72.5
Min nTPM: 59.1
Sample A
68.8
Sample A
72.5
Sample A
71.1
Sample A
59.1
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The Human Protein Atlas project is funded
