A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
217.4
nTPM
Monaco:
625.9
nTPM
Schmiedel:
651.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
217.4
HPA sample
nTPM
Memory B-cell nTPM: 213.9
Samples: 6
Max nTPM: 265.6
Min nTPM: 159.8
P10809_1017
198.2
P10809_1025
221.3
P10809_1044
218.4
P10809_1063
265.6
P10809_1092
219.9
P10809_1105
159.8
Naive B-cell nTPM: 217.4
Samples: 6
Max nTPM: 402.5
Min nTPM: 142.3
P10809_1011
166.8
P10809_1029
165.8
P10809_1048
402.5
P10809_1067
192.5
P10809_1091
234.7
P10809_1104
142.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
625.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 548.2
Samples: 4
Max nTPM: 719.4
Min nTPM: 401.1
RHH5310_R3677
401.1
RHH5218_R3590
527.0
RHH5247_R3619
719.4
RHH5276_R3648
545.1
Naive B-cell nTPM: 593.7
Samples: 4
Max nTPM: 718.4
Min nTPM: 395.8
RHH5308_R3675
395.8
RHH5216_R3588
718.4
RHH5245_R3617
701.6
RHH5274_R3646
559.0
Non-switched memory B-cell nTPM: 625.9
Samples: 4
Max nTPM: 743.3
Min nTPM: 510.6
RHH5309_R3676
510.6
RHH5217_R3589
743.3
RHH5246_R3618
645.5
RHH5275_R3647
604.1
Plasmablast nTPM: 257.9
Samples: 4
Max nTPM: 318.6
Min nTPM: 206.7
RHH5312_R3679
318.6
RHH5220_R3592
239.6
RHH5249_R3621
206.7
RHH5278_R3650
266.5
Switched memory B-cell nTPM: 474.8
Samples: 4
Max nTPM: 598.3
Min nTPM: 406.9
RHH5311_R3678
406.9
RHH5219_R3591
431.3
RHH5248_R3620
598.3
RHH5277_R3649
462.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
651.2
Schmiedel sample id
TPM
Naive B-cell TPM: 651.2
Samples: 91
Max TPM: 966.6
Min TPM: 444.0
B_CELL_NAIVE_1
966.6
B_CELL_NAIVE_2
965.8
B_CELL_NAIVE_3
897.9
B_CELL_NAIVE_4
889.7
B_CELL_NAIVE_5
840.4
B_CELL_NAIVE_6
835.2
B_CELL_NAIVE_7
812.3
B_CELL_NAIVE_8
774.9
B_CELL_NAIVE_9
768.5
B_CELL_NAIVE_10
762.9
B_CELL_NAIVE_11
748.5
B_CELL_NAIVE_12
735.8
B_CELL_NAIVE_13
731.8
B_CELL_NAIVE_14
731.4
B_CELL_NAIVE_15
730.4
B_CELL_NAIVE_16
730.0
B_CELL_NAIVE_17
728.6
B_CELL_NAIVE_18
710.8
B_CELL_NAIVE_19
707.2
B_CELL_NAIVE_20
698.1
B_CELL_NAIVE_21
695.8
B_CELL_NAIVE_22
685.0
B_CELL_NAIVE_23
680.1
B_CELL_NAIVE_24
678.9
B_CELL_NAIVE_25
678.4
B_CELL_NAIVE_26
675.2
B_CELL_NAIVE_27
671.5
B_CELL_NAIVE_28
671.1
B_CELL_NAIVE_29
669.2
B_CELL_NAIVE_30
664.7
B_CELL_NAIVE_31
664.3
B_CELL_NAIVE_32
659.7
B_CELL_NAIVE_33
657.3
B_CELL_NAIVE_34
654.4
B_CELL_NAIVE_35
651.8
B_CELL_NAIVE_36
649.6
B_CELL_NAIVE_37
649.4
B_CELL_NAIVE_38
648.6
B_CELL_NAIVE_39
648.6
B_CELL_NAIVE_40
648.4
B_CELL_NAIVE_41
645.8
B_CELL_NAIVE_42
645.2
B_CELL_NAIVE_43
641.9
B_CELL_NAIVE_44
640.1
B_CELL_NAIVE_45
640.0
B_CELL_NAIVE_46
636.4
B_CELL_NAIVE_47
634.4
B_CELL_NAIVE_48
633.3
B_CELL_NAIVE_49
633.3
B_CELL_NAIVE_50
632.3
B_CELL_NAIVE_51
631.9
B_CELL_NAIVE_52
627.6
B_CELL_NAIVE_53
625.3
B_CELL_NAIVE_54
623.7
B_CELL_NAIVE_55
622.1
B_CELL_NAIVE_56
621.0
B_CELL_NAIVE_57
615.9
B_CELL_NAIVE_58
614.6
B_CELL_NAIVE_59
610.4
B_CELL_NAIVE_60
609.1
B_CELL_NAIVE_61
605.4
B_CELL_NAIVE_62
604.4
B_CELL_NAIVE_63
600.4
B_CELL_NAIVE_64
597.2
B_CELL_NAIVE_65
597.1
B_CELL_NAIVE_66
596.4
B_CELL_NAIVE_67
595.7
B_CELL_NAIVE_68
594.0
B_CELL_NAIVE_69
592.5
B_CELL_NAIVE_70
590.5
B_CELL_NAIVE_71
588.4
B_CELL_NAIVE_72
585.8
B_CELL_NAIVE_73
585.4
B_CELL_NAIVE_74
584.7
B_CELL_NAIVE_75
583.7
B_CELL_NAIVE_76
583.0
B_CELL_NAIVE_77
577.4
B_CELL_NAIVE_78
573.7
B_CELL_NAIVE_79
573.1
B_CELL_NAIVE_80
571.1
B_CELL_NAIVE_81
559.7
B_CELL_NAIVE_82
551.6
B_CELL_NAIVE_83
546.2
B_CELL_NAIVE_84
543.3
B_CELL_NAIVE_85
539.6
B_CELL_NAIVE_86
534.0
B_CELL_NAIVE_87
533.9
B_CELL_NAIVE_88
532.7
B_CELL_NAIVE_89
532.0
B_CELL_NAIVE_90
510.6
B_CELL_NAIVE_91
444.0
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