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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • PTPRC
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:217.4 nTPM
Monaco:625.9 nTPM
Schmiedel:651.2 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

217.4
HPA sample nTPM
Memory B-cell
nTPM: 213.9
Samples: 6

Max nTPM: 265.6
Min nTPM: 159.8
P10809_1017 198.2
P10809_1025 221.3
P10809_1044 218.4
P10809_1063 265.6
P10809_1092 219.9
P10809_1105 159.8
Naive B-cell
nTPM: 217.4
Samples: 6

Max nTPM: 402.5
Min nTPM: 142.3
P10809_1011 166.8
P10809_1029 165.8
P10809_1048 402.5
P10809_1067 192.5
P10809_1091 234.7
P10809_1104 142.3

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

625.9
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 548.2
Samples: 4

Max nTPM: 719.4
Min nTPM: 401.1
RHH5310_R3677 401.1
RHH5218_R3590 527.0
RHH5247_R3619 719.4
RHH5276_R3648 545.1
Naive B-cell
nTPM: 593.7
Samples: 4

Max nTPM: 718.4
Min nTPM: 395.8
RHH5308_R3675 395.8
RHH5216_R3588 718.4
RHH5245_R3617 701.6
RHH5274_R3646 559.0
Non-switched memory B-cell
nTPM: 625.9
Samples: 4

Max nTPM: 743.3
Min nTPM: 510.6
RHH5309_R3676 510.6
RHH5217_R3589 743.3
RHH5246_R3618 645.5
RHH5275_R3647 604.1
Plasmablast
nTPM: 257.9
Samples: 4

Max nTPM: 318.6
Min nTPM: 206.7
RHH5312_R3679 318.6
RHH5220_R3592 239.6
RHH5249_R3621 206.7
RHH5278_R3650 266.5
Switched memory B-cell
nTPM: 474.8
Samples: 4

Max nTPM: 598.3
Min nTPM: 406.9
RHH5311_R3678 406.9
RHH5219_R3591 431.3
RHH5248_R3620 598.3
RHH5277_R3649 462.5

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

651.2
Schmiedel sample id TPM
Naive B-cell
TPM: 651.2
Samples: 91

Max TPM: 966.6
Min TPM: 444.0
B_CELL_NAIVE_1 966.6
B_CELL_NAIVE_2 965.8
B_CELL_NAIVE_3 897.9
B_CELL_NAIVE_4 889.7
B_CELL_NAIVE_5 840.4
B_CELL_NAIVE_6 835.2
B_CELL_NAIVE_7 812.3
B_CELL_NAIVE_8 774.9
B_CELL_NAIVE_9 768.5
B_CELL_NAIVE_10 762.9
B_CELL_NAIVE_11 748.5
B_CELL_NAIVE_12 735.8
B_CELL_NAIVE_13 731.8
B_CELL_NAIVE_14 731.4
B_CELL_NAIVE_15 730.4
B_CELL_NAIVE_16 730.0
B_CELL_NAIVE_17 728.6
B_CELL_NAIVE_18 710.8
B_CELL_NAIVE_19 707.2
B_CELL_NAIVE_20 698.1
B_CELL_NAIVE_21 695.8
B_CELL_NAIVE_22 685.0
B_CELL_NAIVE_23 680.1
B_CELL_NAIVE_24 678.9
B_CELL_NAIVE_25 678.4
B_CELL_NAIVE_26 675.2
B_CELL_NAIVE_27 671.5
B_CELL_NAIVE_28 671.1
B_CELL_NAIVE_29 669.2
B_CELL_NAIVE_30 664.7
B_CELL_NAIVE_31 664.3
B_CELL_NAIVE_32 659.7
B_CELL_NAIVE_33 657.3
B_CELL_NAIVE_34 654.4
B_CELL_NAIVE_35 651.8
B_CELL_NAIVE_36 649.6
B_CELL_NAIVE_37 649.4
B_CELL_NAIVE_38 648.6
B_CELL_NAIVE_39 648.6
B_CELL_NAIVE_40 648.4
B_CELL_NAIVE_41 645.8
B_CELL_NAIVE_42 645.2
B_CELL_NAIVE_43 641.9
B_CELL_NAIVE_44 640.1
B_CELL_NAIVE_45 640.0
B_CELL_NAIVE_46 636.4
B_CELL_NAIVE_47 634.4
B_CELL_NAIVE_48 633.3
B_CELL_NAIVE_49 633.3
B_CELL_NAIVE_50 632.3
B_CELL_NAIVE_51 631.9
B_CELL_NAIVE_52 627.6
B_CELL_NAIVE_53 625.3
B_CELL_NAIVE_54 623.7
B_CELL_NAIVE_55 622.1
B_CELL_NAIVE_56 621.0
B_CELL_NAIVE_57 615.9
B_CELL_NAIVE_58 614.6
B_CELL_NAIVE_59 610.4
B_CELL_NAIVE_60 609.1
B_CELL_NAIVE_61 605.4
B_CELL_NAIVE_62 604.4
B_CELL_NAIVE_63 600.4
B_CELL_NAIVE_64 597.2
B_CELL_NAIVE_65 597.1
B_CELL_NAIVE_66 596.4
B_CELL_NAIVE_67 595.7
B_CELL_NAIVE_68 594.0
B_CELL_NAIVE_69 592.5
B_CELL_NAIVE_70 590.5
B_CELL_NAIVE_71 588.4
B_CELL_NAIVE_72 585.8
B_CELL_NAIVE_73 585.4
B_CELL_NAIVE_74 584.7
B_CELL_NAIVE_75 583.7
B_CELL_NAIVE_76 583.0
B_CELL_NAIVE_77 577.4
B_CELL_NAIVE_78 573.7
B_CELL_NAIVE_79 573.1
B_CELL_NAIVE_80 571.1
B_CELL_NAIVE_81 559.7
B_CELL_NAIVE_82 551.6
B_CELL_NAIVE_83 546.2
B_CELL_NAIVE_84 543.3
B_CELL_NAIVE_85 539.6
B_CELL_NAIVE_86 534.0
B_CELL_NAIVE_87 533.9
B_CELL_NAIVE_88 532.7
B_CELL_NAIVE_89 532.0
B_CELL_NAIVE_90 510.6
B_CELL_NAIVE_91 444.0
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