A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
433.4
nTPM
Monaco:
1313.0
nTPM
Schmiedel:
1314.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
433.4
HPA sample
nTPM
NK-cell nTPM: 433.4
Samples: 6
Max nTPM: 563.3
Min nTPM: 340.7
P10809_1013
340.7
P10809_1033
497.9
P10809_1052
366.3
P10809_1071
465.7
P10809_1093
563.3
P10809_1103
366.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1313.0
Monaco sample
nTPM
NK-cell nTPM: 1313.0
Samples: 4
Max nTPM: 1459.9
Min nTPM: 1007.0
RHH5316_R3683
1007.0
RHH5224_R3596
1349.1
RHH5253_R3625
1459.9
RHH5282_R3654
1436.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1314.7
Schmiedel sample id
TPM
NK-cell TPM: 1314.7
Samples: 90
Max TPM: 1930.9
Min TPM: 965.9
NK_1
1930.9
NK_2
1920.9
NK_3
1837.0
NK_4
1686.0
NK_5
1684.8
NK_6
1672.1
NK_7
1633.5
NK_8
1628.7
NK_9
1549.1
NK_10
1541.4
NK_11
1530.4
NK_12
1519.0
NK_13
1511.4
NK_14
1507.6
NK_15
1481.9
NK_16
1473.6
NK_17
1460.8
NK_18
1450.8
NK_19
1448.6
NK_20
1443.1
NK_21
1436.3
NK_22
1429.0
NK_23
1395.3
NK_24
1391.2
NK_25
1382.8
NK_26
1377.9
NK_27
1371.3
NK_28
1371.3
NK_29
1362.8
NK_30
1362.7
NK_31
1360.0
NK_32
1358.3
NK_33
1356.7
NK_34
1354.1
NK_35
1352.6
NK_36
1348.0
NK_37
1342.4
NK_38
1328.0
NK_39
1327.9
NK_40
1323.2
NK_41
1320.2
NK_42
1314.3
NK_43
1306.5
NK_44
1276.3
NK_45
1275.4
NK_46
1275.3
NK_47
1269.8
NK_48
1266.3
NK_49
1258.2
NK_50
1252.6
NK_51
1249.5
NK_52
1249.4
NK_53
1248.5
NK_54
1245.1
NK_55
1243.5
NK_56
1238.8
NK_57
1237.6
NK_58
1234.5
NK_59
1225.0
NK_60
1223.7
NK_61
1219.3
NK_62
1201.9
NK_63
1201.3
NK_64
1201.0
NK_65
1199.7
NK_66
1198.4
NK_67
1194.3
NK_68
1193.9
NK_69
1186.9
NK_70
1183.7
NK_71
1183.6
NK_72
1175.2
NK_73
1155.3
NK_74
1154.4
NK_75
1150.5
NK_76
1142.3
NK_77
1121.0
NK_78
1117.1
NK_79
1115.2
NK_80
1113.3
NK_81
1107.9
NK_82
1083.6
NK_83
1082.9
NK_84
1073.2
NK_85
1048.3
NK_86
1046.1
NK_87
1044.0
NK_88
1017.7
NK_89
994.1
NK_90
965.9
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