A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
907.8
nTPM
Monaco:
2129.3
nTPM
Schmiedel:
1684.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
907.8
HPA sample
nTPM
Classical monocyte nTPM: 423.8
Samples: 6
Max nTPM: 630.9
Min nTPM: 229.3
P10809_1003
630.9
P10809_1020
428.3
P10809_1039
472.6
P10809_1058
390.2
P10809_1080
391.4
P10809_1107
229.3
Intermediate monocyte nTPM: 798.7
Samples: 6
Max nTPM: 1242.8
Min nTPM: 375.9
P10809_1004
809.7
P10809_1023
770.3
P10809_1042
952.2
P10809_1061
1242.8
P10809_1081
641.0
P10809_1108
375.9
Non-classical monocyte nTPM: 907.8
Samples: 5
Max nTPM: 1891.4
Min nTPM: 413.4
P10809_1005
725.7
P10809_1053
820.1
P10809_1072
1891.4
P10809_1082
688.2
P10809_1109
413.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2129.3
Monaco sample
nTPM
Classical monocyte nTPM: 1387.0
Samples: 4
Max nTPM: 1775.7
Min nTPM: 1035.0
RHH5313_R3680
1035.0
RHH5221_R3593
1775.7
RHH5250_R3622
1504.7
RHH5279_R3651
1232.7
Intermediate monocyte nTPM: 1923.5
Samples: 4
Max nTPM: 2400.6
Min nTPM: 1564.6
RHH5314_R3681
1564.6
RHH5222_R3594
2400.6
RHH5251_R3623
1757.8
RHH5280_R3652
1971.0
Non-classical monocyte nTPM: 2129.3
Samples: 4
Max nTPM: 2675.2
Min nTPM: 1671.9
RHH5315_R3682
1671.9
RHH5223_R3595
2675.2
RHH5252_R3624
2028.6
RHH5281_R3653
2141.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1684.1
Schmiedel sample id
TPM
Classical monocyte TPM: 693.1
Samples: 91
Max TPM: 946.2
Min TPM: 498.1
MONOCYTES_1
946.2
MONOCYTES_2
897.7
MONOCYTES_3
863.2
MONOCYTES_4
849.5
MONOCYTES_5
848.8
MONOCYTES_6
841.3
MONOCYTES_7
837.5
MONOCYTES_8
837.1
MONOCYTES_9
819.4
MONOCYTES_10
814.6
MONOCYTES_11
806.8
MONOCYTES_12
799.9
MONOCYTES_13
797.1
MONOCYTES_14
792.9
MONOCYTES_15
791.5
MONOCYTES_16
789.2
MONOCYTES_17
787.5
MONOCYTES_18
786.6
MONOCYTES_19
784.9
MONOCYTES_20
784.3
MONOCYTES_21
782.4
MONOCYTES_22
779.7
MONOCYTES_23
777.0
MONOCYTES_24
766.8
MONOCYTES_25
765.3
MONOCYTES_26
757.5
MONOCYTES_27
755.8
MONOCYTES_28
750.4
MONOCYTES_29
750.4
MONOCYTES_30
748.6
MONOCYTES_31
739.9
MONOCYTES_32
739.8
MONOCYTES_33
739.5
MONOCYTES_34
737.8
MONOCYTES_35
737.6
MONOCYTES_36
722.9
MONOCYTES_37
716.8
MONOCYTES_38
702.1
MONOCYTES_39
698.0
MONOCYTES_40
693.3
MONOCYTES_41
691.9
MONOCYTES_42
691.4
MONOCYTES_43
690.8
MONOCYTES_44
688.6
MONOCYTES_45
683.3
MONOCYTES_46
682.8
MONOCYTES_47
682.4
MONOCYTES_48
680.6
MONOCYTES_49
679.8
MONOCYTES_50
676.1
MONOCYTES_51
672.2
MONOCYTES_52
671.9
MONOCYTES_53
667.4
MONOCYTES_54
666.0
MONOCYTES_55
663.3
MONOCYTES_56
659.7
MONOCYTES_57
658.6
MONOCYTES_58
655.2
MONOCYTES_59
650.8
MONOCYTES_60
645.8
MONOCYTES_61
644.5
MONOCYTES_62
642.1
MONOCYTES_63
634.1
MONOCYTES_64
628.8
MONOCYTES_65
625.5
MONOCYTES_66
623.6
MONOCYTES_67
621.0
MONOCYTES_68
606.6
MONOCYTES_69
603.2
MONOCYTES_70
602.6
MONOCYTES_71
601.0
MONOCYTES_72
597.9
MONOCYTES_73
595.9
MONOCYTES_74
595.2
MONOCYTES_75
594.8
MONOCYTES_76
594.6
MONOCYTES_77
593.7
MONOCYTES_78
591.9
MONOCYTES_79
588.8
MONOCYTES_80
585.5
MONOCYTES_81
584.7
MONOCYTES_82
584.2
MONOCYTES_83
583.4
MONOCYTES_84
570.3
MONOCYTES_85
568.0
MONOCYTES_86
567.1
MONOCYTES_87
561.1
MONOCYTES_88
538.2
MONOCYTES_89
537.7
MONOCYTES_90
515.4
MONOCYTES_91
498.1
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Non-classical monocyte TPM: 1684.1
Samples: 90
Max TPM: 2398.0
Min TPM: 1159.7
M2_1
2398.0
M2_2
2353.9
M2_3
2297.2
M2_4
2291.6
M2_5
2284.4
M2_6
2274.2
M2_7
2251.6
M2_8
2238.6
M2_9
2225.5
M2_10
2163.3
M2_11
2083.6
M2_12
1971.2
M2_13
1934.6
M2_14
1919.7
M2_15
1908.0
M2_16
1900.5
M2_17
1890.5
M2_18
1863.4
M2_19
1825.3
M2_20
1821.9
M2_21
1821.5
M2_22
1808.9
M2_23
1798.2
M2_24
1795.8
M2_25
1793.4
M2_26
1779.9
M2_27
1757.1
M2_28
1749.5
M2_29
1748.0
M2_30
1746.3
M2_31
1740.0
M2_32
1735.1
M2_33
1731.5
M2_34
1714.7
M2_35
1706.0
M2_36
1702.0
M2_37
1700.8
M2_38
1698.9
M2_39
1696.2
M2_40
1695.9
M2_41
1692.9
M2_42
1690.5
M2_43
1682.7
M2_44
1651.7
M2_45
1649.4
M2_46
1643.7
M2_47
1640.7
M2_48
1628.6
M2_49
1624.3
M2_50
1618.0
M2_51
1613.0
M2_52
1610.3
M2_53
1603.3
M2_54
1592.6
M2_55
1563.0
M2_56
1555.7
M2_57
1545.7
M2_58
1543.3
M2_59
1542.8
M2_60
1531.0
M2_61
1528.6
M2_62
1524.2
M2_63
1518.7
M2_64
1509.5
M2_65
1499.8
M2_66
1496.8
M2_67
1496.0
M2_68
1468.8
M2_69
1465.8
M2_70
1464.1
M2_71
1461.1
M2_72
1456.2
M2_73
1448.4
M2_74
1446.5
M2_75
1434.8
M2_76
1427.0
M2_77
1423.7
M2_78
1417.6
M2_79
1417.4
M2_80
1407.8
M2_81
1394.8
M2_82
1390.3
M2_83
1387.7
M2_84
1385.8
M2_85
1346.3
M2_86
1333.8
M2_87
1295.3
M2_88
1292.3
M2_89
1231.2
M2_90
1159.7
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