On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
104.7
nTPM
HPA Brain:
285.6
nTPM
GTEx:
104.7
nTPM
FANTOM5:
219.7
Scaled Tags Per Million
Macaque:
114.5
nTPM
Mouse:
189.0
nTPM
Rat:
138.7
nTPM
Pig:
107.9
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
285.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 227.7
1827
Male, age 72, unknown
271.3
2666
Male, age 74, left hemisphere
268.7
2828
Female, age 72, unknown
261.2
2586
Male, age 75, left hemisphere
251.8
1870
Female, age 42, unknown
212.9
1830
Male, age 51, unknown
211.1
1833
Male, age 53, unknown
210.9
2019
Male, age 18, unknown
209.9
2411
Female, age 72, unknown
205.4
2219
Male, age 76, both hemispheres
173.9
Dorsal raphe nucleus nTPM: 231.2
2047
Male, age 72, unknown
260.4
1828
Male, age 53, unknown
246.5
2298
Female, age 72, unknown
225.0
2016
Female, age 72, unknown
217.8
2750
Male, age 76, both hemispheres
206.4
Inferior colliculus nTPM: 200.2
1848
Female, age 42, unknown
212.7
1890
Male, age 53, unknown
201.1
2849
Male, age 72, unknown
200.5
2097
Female, age 72, unknown
186.4
Median raphe nucleus nTPM: 238.7
2220
Male, age 76, midline
238.7
Periaquaductal grey, anterior nTPM: 276.0
1947
Male, age 18, unknown
280.4
1795
Male, age 51, unknown
274.0
2502
Female, age 75, unknown
273.6
Periaquaductal grey, dorsal nTPM: 222.1
1831
Male, age 72, unknown
255.0
2850
Male, age 76, both hemispheres
240.0
1840
Male, age 53, unknown
213.7
2464
Female, age 72, unknown
179.8
Periaquaductal grey, lateral nTPM: 240.7
2272
Male, age 74, both hemispheres
262.9
2053
Male, age 18, unknown
238.3
2140
Male, age 76, both hemispheres
220.8
Pretectal area nTPM: 263.8
2273
Male, age 74, both hemispheres
347.6
2407
Male, age 75, both hemispheres
308.1
2667
Female, age 75, unknown
304.0
1816
Male, age 51, unknown
287.8
1944
Female, age 72, unknown
270.2
2007
Male, age 72, unknown
249.9
1815
Male, age 53, unknown
246.2
1817
Female, age 42, unknown
241.3
2825
Male, age 18, unknown
240.4
2224
Female, age 72, unknown
204.0
2316
Male, age 76, right hemisphere
202.1
Red nucleus nTPM: 197.1
2584
Male, age 75, left hemisphere
229.7
2725
Female, age 75, unknown
225.0
1821
Female, age 72, unknown
218.9
2785
Male, age 18, unknown
205.5
2588
Male, age 74, left hemisphere
205.3
1954
Female, age 42, unknown
190.8
1865
Male, age 51, unknown
190.5
2503
Female, age 72, unknown
188.7
2769
Male, age 72, unknown
184.1
2227
Male, age 72, unknown
183.1
1904
Male, age 53, unknown
176.5
2823
Male, age 76, right hemisphere
167.2
Substantia nigra nTPM: 285.6
1916
Female, age 42, unknown
370.5
1941
Male, age 53, unknown
330.7
2665
Male, age 74, both hemispheres
318.7
1851
Male, age 51, unknown
300.1
2699
Male, age 18, unknown
291.0
1889
Female, age 72, unknown
254.6
2583
Male, age 75, right hemisphere
253.6
2590
Female, age 75, unknown
250.6
2409
Female, age 72, unknown
245.3
2241
Male, age 72, unknown
240.9
Superior colliculus nTPM: 233.7
2664
Male, age 75, both hemispheres
319.1
2587
Male, age 74, left hemisphere
278.3
1796
Male, age 53, unknown
256.3
2261
Male, age 18, unknown
246.1
2087
Female, age 72, unknown
239.8
1839
Male, age 51, unknown
229.4
1995
Male, age 72, unknown
203.5
1913
Female, age 42, unknown
199.3
2668
Female, age 75, unknown
195.4
1895
Male, age 76, right hemisphere
169.4
Ventral tegmental area nTPM: 246.8
1915
Female, age 42, unknown
279.7
2410
Female, age 72, unknown
276.8
2218
Male, age 76, both hemispheres
239.9
1942
Male, age 51, unknown
232.8
2021
Male, age 53, unknown
227.1
2223
Female, age 72, unknown
224.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
104.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 104.7
Samples: 183
Max nTPM: 239.7
Min nTPM: 59.2
Std nTPM: 24.9
Median nTPM: 99.0
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
239.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
184.8
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
177.3
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
175.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
172.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
163.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
154.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
154.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
153.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
151.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
149.2
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
146.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
145.6
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
145.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
144.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
140.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
140.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
140.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
138.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
136.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
136.0
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
133.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
133.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
132.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
129.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
128.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
128.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
127.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
126.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
126.1
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
125.7
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
125.2
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
124.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
124.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
122.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
122.2
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
121.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
121.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
121.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
120.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
119.3
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
119.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
115.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
115.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
115.2
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
114.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
114.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
113.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
113.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
113.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
112.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
112.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
111.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
111.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
110.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
110.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
109.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
109.0
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
108.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
107.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
107.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
107.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
107.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
106.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
106.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
106.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
106.3
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
105.8
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
105.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
105.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
105.4
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
105.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
105.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
104.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
104.3
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
104.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
104.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
103.7
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
103.0
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
102.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
102.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
102.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
102.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
102.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
101.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
101.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
101.1
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
100.0
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
99.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
99.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
99.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
99.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
98.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
97.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
97.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
97.3
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
97.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
97.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
97.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
96.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
96.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
96.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
96.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
96.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
96.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
95.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
95.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
94.9
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
94.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
94.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
94.3
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
94.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
94.1
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
93.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
93.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
92.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
92.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
92.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
92.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
91.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
91.6
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
91.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
91.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
90.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
90.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
90.8
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
90.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
90.3
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
90.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
89.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
89.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
89.3
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
89.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
89.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
89.1
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
88.4
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
87.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
87.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
87.4
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
86.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
86.6
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
86.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
86.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
86.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
86.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
85.4
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
85.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
85.3
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
85.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
85.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
84.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
84.2
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
84.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
84.0
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
83.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
83.6
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
82.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
82.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
82.6
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
81.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
81.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
81.4
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
81.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
80.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
80.1
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
79.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
79.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
79.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
79.0
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
78.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
77.5
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
77.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
77.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
76.1
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
75.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
74.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
74.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
73.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
71.2
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
69.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
69.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
65.8
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
59.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
114.5
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 86.6
Samples: 1
Max nTPM: 86.6
Min nTPM: 86.6
Sample A
86.6
Midbrain nTPM: 100.8
Samples: 1
Max nTPM: 100.8
Min nTPM: 100.8
Sample A
100.8
Superior colliculi nTPM: 114.5
Samples: 1
Max nTPM: 114.5
Min nTPM: 114.5
Sample A
114.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.9
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 100.3
Samples: 3
Max nTPM: 108.0
Min nTPM: 85.9
Sample A
Female
108.0
Sample B
Female
85.9
Sample C
Male
107.1
Midbrain nTPM: 91.8
Samples: 3
Max nTPM: 110.9
Min nTPM: 73.9
Sample B
Female
73.9
Sample C
Male
110.9
Sample D
Male
90.6
Periaqueductal gray nTPM: 85.1
Samples: 3
Max nTPM: 95.8
Min nTPM: 78.8
Sample B
Female
78.8
Sample C
Male
95.8
Sample D
Male
80.7
Superior colliculi nTPM: 107.9
Samples: 4
Max nTPM: 112.4
Min nTPM: 103.2
Sample A
Female
110.7
Sample B
Female
112.4
Sample C
Male
103.2
Sample D
Male
105.1
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
189.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 189.0
Samples: 4
Max nTPM: 209.6
Min nTPM: 175.8
Sample A
175.8
Sample B
209.6
Sample C
190.3
Sample D
180.4
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
138.7
Rat sample
Sample description
nTPM
Midbrain nTPM: 138.7
Samples: 4
Max nTPM: 142.5
Min nTPM: 132.8
Sample A
142.5
Sample A
142.1
Sample A
132.8
Sample A
137.3
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The Human Protein Atlas project is funded
