A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.2
nTPM
Monaco:
95.4
nTPM
Schmiedel:
88.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.2
HPA sample
nTPM
Memory B-cell nTPM: 11.6
Samples: 6
Max nTPM: 20.4
Min nTPM: 8.2
P10809_1017
9.7
P10809_1025
9.1
P10809_1044
8.2
P10809_1063
20.4
P10809_1092
13.3
P10809_1105
9.0
Naive B-cell nTPM: 12.2
Samples: 6
Max nTPM: 15.9
Min nTPM: 6.2
P10809_1011
6.2
P10809_1029
13.0
P10809_1048
15.9
P10809_1067
15.0
P10809_1091
12.8
P10809_1104
10.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.4
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 65.2
Samples: 4
Max nTPM: 81.6
Min nTPM: 49.4
RHH5310_R3677
49.4
RHH5218_R3590
63.2
RHH5247_R3619
81.6
RHH5276_R3648
66.6
Naive B-cell nTPM: 74.1
Samples: 4
Max nTPM: 95.3
Min nTPM: 52.9
RHH5308_R3675
52.9
RHH5216_R3588
56.5
RHH5245_R3617
91.6
RHH5274_R3646
95.3
Non-switched memory B-cell nTPM: 78.8
Samples: 4
Max nTPM: 93.6
Min nTPM: 64.1
RHH5309_R3676
64.1
RHH5217_R3589
93.6
RHH5246_R3618
81.3
RHH5275_R3647
76.1
Plasmablast nTPM: 95.4
Samples: 4
Max nTPM: 115.0
Min nTPM: 66.1
RHH5312_R3679
114.3
RHH5220_R3592
66.1
RHH5249_R3621
86.3
RHH5278_R3650
115.0
Switched memory B-cell nTPM: 71.5
Samples: 4
Max nTPM: 109.8
Min nTPM: 46.7
RHH5311_R3678
55.5
RHH5219_R3591
46.7
RHH5248_R3620
109.8
RHH5277_R3649
73.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
88.9
Schmiedel sample id
TPM
Naive B-cell TPM: 88.9
Samples: 91
Max TPM: 129.0
Min TPM: 63.9
B_CELL_NAIVE_1
129.0
B_CELL_NAIVE_2
125.0
B_CELL_NAIVE_3
124.2
B_CELL_NAIVE_4
121.1
B_CELL_NAIVE_5
114.0
B_CELL_NAIVE_6
113.1
B_CELL_NAIVE_7
111.7
B_CELL_NAIVE_8
109.0
B_CELL_NAIVE_9
108.0
B_CELL_NAIVE_10
106.4
B_CELL_NAIVE_11
105.5
B_CELL_NAIVE_12
102.5
B_CELL_NAIVE_13
101.9
B_CELL_NAIVE_14
99.5
B_CELL_NAIVE_15
99.4
B_CELL_NAIVE_16
98.5
B_CELL_NAIVE_17
97.1
B_CELL_NAIVE_18
96.7
B_CELL_NAIVE_19
96.1
B_CELL_NAIVE_20
95.2
B_CELL_NAIVE_21
94.5
B_CELL_NAIVE_22
94.0
B_CELL_NAIVE_23
93.8
B_CELL_NAIVE_24
93.2
B_CELL_NAIVE_25
93.1
B_CELL_NAIVE_26
92.9
B_CELL_NAIVE_27
92.1
B_CELL_NAIVE_28
92.0
B_CELL_NAIVE_29
91.5
B_CELL_NAIVE_30
91.3
B_CELL_NAIVE_31
90.8
B_CELL_NAIVE_32
90.7
B_CELL_NAIVE_33
90.4
B_CELL_NAIVE_34
89.9
B_CELL_NAIVE_35
89.8
B_CELL_NAIVE_36
89.7
B_CELL_NAIVE_37
89.6
B_CELL_NAIVE_38
89.6
B_CELL_NAIVE_39
88.8
B_CELL_NAIVE_40
88.8
B_CELL_NAIVE_41
88.7
B_CELL_NAIVE_42
88.7
B_CELL_NAIVE_43
88.3
B_CELL_NAIVE_44
87.8
B_CELL_NAIVE_45
87.7
B_CELL_NAIVE_46
87.6
B_CELL_NAIVE_47
87.5
B_CELL_NAIVE_48
87.2
B_CELL_NAIVE_49
87.0
B_CELL_NAIVE_50
86.7
B_CELL_NAIVE_51
86.4
B_CELL_NAIVE_52
86.3
B_CELL_NAIVE_53
86.3
B_CELL_NAIVE_54
86.3
B_CELL_NAIVE_55
85.3
B_CELL_NAIVE_56
85.3
B_CELL_NAIVE_57
85.0
B_CELL_NAIVE_58
84.8
B_CELL_NAIVE_59
84.2
B_CELL_NAIVE_60
84.2
B_CELL_NAIVE_61
83.9
B_CELL_NAIVE_62
83.0
B_CELL_NAIVE_63
81.7
B_CELL_NAIVE_64
81.4
B_CELL_NAIVE_65
81.4
B_CELL_NAIVE_66
81.2
B_CELL_NAIVE_67
80.5
B_CELL_NAIVE_68
80.4
B_CELL_NAIVE_69
80.1
B_CELL_NAIVE_70
79.8
B_CELL_NAIVE_71
78.8
B_CELL_NAIVE_72
78.0
B_CELL_NAIVE_73
77.7
B_CELL_NAIVE_74
77.7
B_CELL_NAIVE_75
77.5
B_CELL_NAIVE_76
77.3
B_CELL_NAIVE_77
77.1
B_CELL_NAIVE_78
76.8
B_CELL_NAIVE_79
76.5
B_CELL_NAIVE_80
76.3
B_CELL_NAIVE_81
75.7
B_CELL_NAIVE_82
75.1
B_CELL_NAIVE_83
74.8
B_CELL_NAIVE_84
74.1
B_CELL_NAIVE_85
73.2
B_CELL_NAIVE_86
72.7
B_CELL_NAIVE_87
72.3
B_CELL_NAIVE_88
72.3
B_CELL_NAIVE_89
70.4
B_CELL_NAIVE_90
70.0
B_CELL_NAIVE_91
63.9
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The Human Protein Atlas project is funded
