A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
12.8
nTPM
Monaco:
89.4
nTPM
Schmiedel:
98.8
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.8
HPA sample
nTPM
NK-cell nTPM: 12.8
Samples: 6
Max nTPM: 24.5
Min nTPM: 6.5
P10809_1013
8.0
P10809_1033
13.6
P10809_1052
13.7
P10809_1071
10.7
P10809_1093
24.5
P10809_1103
6.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
89.4
Monaco sample
nTPM
NK-cell nTPM: 89.5
Samples: 4
Max nTPM: 112.5
Min nTPM: 76.1
RHH5316_R3683
82.9
RHH5224_R3596
76.1
RHH5253_R3625
112.5
RHH5282_R3654
86.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
98.8
Schmiedel sample id
TPM
NK-cell TPM: 98.8
Samples: 90
Max TPM: 151.4
Min TPM: 36.5
NK_1
151.4
NK_2
134.0
NK_3
133.0
NK_4
130.8
NK_5
127.4
NK_6
126.2
NK_7
121.3
NK_8
121.0
NK_9
120.1
NK_10
116.6
NK_11
116.4
NK_12
115.6
NK_13
115.0
NK_14
114.3
NK_15
114.0
NK_16
112.2
NK_17
112.0
NK_18
111.5
NK_19
110.4
NK_20
108.9
NK_21
108.6
NK_22
107.7
NK_23
106.8
NK_24
106.8
NK_25
106.8
NK_26
106.3
NK_27
105.8
NK_28
105.1
NK_29
102.8
NK_30
102.6
NK_31
102.4
NK_32
102.1
NK_33
101.8
NK_34
101.3
NK_35
100.9
NK_36
99.9
NK_37
99.9
NK_38
99.5
NK_39
99.1
NK_40
98.8
NK_41
98.6
NK_42
97.8
NK_43
97.7
NK_44
97.4
NK_45
97.2
NK_46
96.7
NK_47
96.3
NK_48
95.9
NK_49
95.8
NK_50
95.6
NK_51
95.0
NK_52
94.9
NK_53
94.6
NK_54
94.5
NK_55
94.1
NK_56
94.0
NK_57
93.6
NK_58
93.5
NK_59
92.6
NK_60
92.5
NK_61
92.1
NK_62
91.4
NK_63
90.2
NK_64
89.8
NK_65
89.7
NK_66
89.6
NK_67
89.2
NK_68
88.9
NK_69
88.4
NK_70
88.2
NK_71
87.8
NK_72
87.2
NK_73
86.8
NK_74
86.6
NK_75
85.5
NK_76
85.5
NK_77
85.4
NK_78
85.2
NK_79
84.7
NK_80
84.5
NK_81
84.0
NK_82
83.6
NK_83
83.0
NK_84
81.9
NK_85
80.7
NK_86
79.3
NK_87
76.9
NK_88
72.7
NK_89
69.9
NK_90
36.5
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