A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
48.2
nTPM
Monaco:
232.7
nTPM
Schmiedel:
181.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.2
HPA sample
nTPM
Classical monocyte nTPM: 19.5
Samples: 6
Max nTPM: 23.6
Min nTPM: 12.2
P10809_1003
20.1
P10809_1020
19.2
P10809_1039
23.6
P10809_1058
20.1
P10809_1080
21.6
P10809_1107
12.2
Intermediate monocyte nTPM: 24.8
Samples: 6
Max nTPM: 41.1
Min nTPM: 14.0
P10809_1004
23.8
P10809_1023
19.6
P10809_1042
26.3
P10809_1061
41.1
P10809_1081
23.9
P10809_1108
14.0
Non-classical monocyte nTPM: 48.2
Samples: 5
Max nTPM: 115.2
Min nTPM: 24.2
P10809_1005
26.2
P10809_1053
39.3
P10809_1072
115.2
P10809_1082
35.9
P10809_1109
24.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
232.7
Monaco sample
nTPM
Classical monocyte nTPM: 134.5
Samples: 4
Max nTPM: 145.8
Min nTPM: 124.5
RHH5313_R3680
139.1
RHH5221_R3593
145.8
RHH5250_R3622
128.7
RHH5279_R3651
124.5
Intermediate monocyte nTPM: 171.3
Samples: 4
Max nTPM: 190.7
Min nTPM: 145.4
RHH5314_R3681
190.7
RHH5222_R3594
166.1
RHH5251_R3623
145.4
RHH5280_R3652
182.9
Non-classical monocyte nTPM: 232.7
Samples: 4
Max nTPM: 268.1
Min nTPM: 192.8
RHH5315_R3682
235.2
RHH5223_R3595
268.1
RHH5252_R3624
192.8
RHH5281_R3653
234.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.1
Schmiedel sample id
TPM
Classical monocyte TPM: 74.5
Samples: 91
Max TPM: 107.9
Min TPM: 55.7
MONOCYTES_1
107.9
MONOCYTES_2
99.6
MONOCYTES_3
95.7
MONOCYTES_4
94.0
MONOCYTES_5
93.0
MONOCYTES_6
91.7
MONOCYTES_7
91.6
MONOCYTES_8
91.5
MONOCYTES_9
91.3
MONOCYTES_10
90.4
MONOCYTES_11
90.2
MONOCYTES_12
89.7
MONOCYTES_13
88.7
MONOCYTES_14
86.8
MONOCYTES_15
86.6
MONOCYTES_16
85.7
MONOCYTES_17
85.5
MONOCYTES_18
84.6
MONOCYTES_19
84.2
MONOCYTES_20
84.1
MONOCYTES_21
83.8
MONOCYTES_22
83.3
MONOCYTES_23
82.5
MONOCYTES_24
82.0
MONOCYTES_25
81.9
MONOCYTES_26
80.2
MONOCYTES_27
79.9
MONOCYTES_28
79.7
MONOCYTES_29
77.9
MONOCYTES_30
77.8
MONOCYTES_31
77.1
MONOCYTES_32
77.0
MONOCYTES_33
76.5
MONOCYTES_34
75.7
MONOCYTES_35
75.3
MONOCYTES_36
75.3
MONOCYTES_37
75.1
MONOCYTES_38
74.8
MONOCYTES_39
74.8
MONOCYTES_40
74.7
MONOCYTES_41
73.3
MONOCYTES_42
73.2
MONOCYTES_43
73.1
MONOCYTES_44
73.1
MONOCYTES_45
71.8
MONOCYTES_46
71.8
MONOCYTES_47
71.8
MONOCYTES_48
71.7
MONOCYTES_49
71.3
MONOCYTES_50
71.2
MONOCYTES_51
71.2
MONOCYTES_52
71.1
MONOCYTES_53
70.8
MONOCYTES_54
70.7
MONOCYTES_55
70.5
MONOCYTES_56
70.4
MONOCYTES_57
70.4
MONOCYTES_58
69.3
MONOCYTES_59
68.8
MONOCYTES_60
68.8
MONOCYTES_61
68.3
MONOCYTES_62
68.3
MONOCYTES_63
67.7
MONOCYTES_64
67.6
MONOCYTES_65
67.4
MONOCYTES_66
67.4
MONOCYTES_67
67.3
MONOCYTES_68
66.6
MONOCYTES_69
66.3
MONOCYTES_70
66.2
MONOCYTES_71
66.1
MONOCYTES_72
66.0
MONOCYTES_73
65.9
MONOCYTES_74
65.6
MONOCYTES_75
65.5
MONOCYTES_76
64.8
MONOCYTES_77
64.2
MONOCYTES_78
63.9
MONOCYTES_79
63.5
MONOCYTES_80
62.6
MONOCYTES_81
62.5
MONOCYTES_82
62.1
MONOCYTES_83
62.0
MONOCYTES_84
61.7
MONOCYTES_85
60.6
MONOCYTES_86
59.6
MONOCYTES_87
59.2
MONOCYTES_88
58.5
MONOCYTES_89
56.2
MONOCYTES_90
55.8
MONOCYTES_91
55.7
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Non-classical monocyte TPM: 181.1
Samples: 90
Max TPM: 257.1
Min TPM: 117.4
M2_1
257.1
M2_2
251.1
M2_3
248.8
M2_4
247.5
M2_5
247.1
M2_6
238.6
M2_7
238.3
M2_8
237.9
M2_9
234.4
M2_10
230.9
M2_11
225.7
M2_12
224.9
M2_13
219.6
M2_14
216.2
M2_15
215.7
M2_16
214.4
M2_17
211.5
M2_18
211.0
M2_19
208.3
M2_20
208.2
M2_21
203.3
M2_22
201.4
M2_23
201.2
M2_24
200.6
M2_25
198.7
M2_26
198.4
M2_27
197.7
M2_28
197.6
M2_29
195.9
M2_30
192.8
M2_31
191.5
M2_32
188.5
M2_33
185.1
M2_34
184.5
M2_35
183.9
M2_36
183.6
M2_37
183.2
M2_38
181.1
M2_39
180.3
M2_40
177.3
M2_41
177.1
M2_42
176.7
M2_43
175.1
M2_44
174.9
M2_45
174.6
M2_46
174.5
M2_47
174.0
M2_48
173.9
M2_49
172.6
M2_50
172.0
M2_51
171.9
M2_52
171.7
M2_53
170.6
M2_54
170.3
M2_55
170.3
M2_56
168.3
M2_57
167.6
M2_58
165.9
M2_59
165.4
M2_60
165.0
M2_61
164.9
M2_62
164.8
M2_63
163.8
M2_64
162.9
M2_65
160.4
M2_66
159.0
M2_67
158.7
M2_68
158.7
M2_69
157.7
M2_70
157.1
M2_71
155.3
M2_72
154.8
M2_73
153.2
M2_74
152.6
M2_75
151.8
M2_76
149.5
M2_77
149.4
M2_78
149.2
M2_79
146.2
M2_80
142.8
M2_81
141.4
M2_82
141.3
M2_83
139.8
M2_84
139.5
M2_85
136.7
M2_86
135.9
M2_87
134.4
M2_88
128.2
M2_89
127.7
M2_90
117.4
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