A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.5
nTPM
Monaco:
27.2
nTPM
Schmiedel:
38.4
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.5
HPA sample
nTPM
Memory B-cell nTPM: 3.4
Samples: 6
Max nTPM: 5.1
Min nTPM: 2.4
P10809_1017
3.7
P10809_1025
2.8
P10809_1044
2.4
P10809_1063
5.1
P10809_1092
3.3
P10809_1105
3.2
Naive B-cell nTPM: 4.5
Samples: 6
Max nTPM: 10.2
Min nTPM: 2.6
P10809_1011
3.4
P10809_1029
4.2
P10809_1048
10.2
P10809_1067
2.6
P10809_1091
3.3
P10809_1104
3.3
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 26.8
Samples: 4
Max nTPM: 36.3
Min nTPM: 22.4
RHH5310_R3677
22.6
RHH5218_R3590
22.4
RHH5247_R3619
36.3
RHH5276_R3648
26.0
Naive B-cell nTPM: 27.2
Samples: 4
Max nTPM: 40.9
Min nTPM: 17.2
RHH5308_R3675
22.3
RHH5216_R3588
40.9
RHH5245_R3617
28.5
RHH5274_R3646
17.2
Non-switched memory B-cell nTPM: 16.8
Samples: 4
Max nTPM: 22.1
Min nTPM: 10.6
RHH5309_R3676
22.1
RHH5217_R3589
15.7
RHH5246_R3618
18.9
RHH5275_R3647
10.6
Plasmablast nTPM: 18.2
Samples: 4
Max nTPM: 21.3
Min nTPM: 15.0
RHH5312_R3679
21.3
RHH5220_R3592
17.7
RHH5249_R3621
18.8
RHH5278_R3650
15.0
Switched memory B-cell nTPM: 22.8
Samples: 4
Max nTPM: 35.0
Min nTPM: 15.7
RHH5311_R3678
21.2
RHH5219_R3591
19.1
RHH5248_R3620
35.0
RHH5277_R3649
15.7
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
38.4
Schmiedel sample id
TPM
Naive B-cell TPM: 38.4
Samples: 91
Max TPM: 63.5
Min TPM: 24.4
B_CELL_NAIVE_1
63.5
B_CELL_NAIVE_2
60.9
B_CELL_NAIVE_3
58.8
B_CELL_NAIVE_4
57.1
B_CELL_NAIVE_5
53.4
B_CELL_NAIVE_6
52.1
B_CELL_NAIVE_7
49.8
B_CELL_NAIVE_8
49.1
B_CELL_NAIVE_9
48.8
B_CELL_NAIVE_10
46.9
B_CELL_NAIVE_11
46.0
B_CELL_NAIVE_12
46.0
B_CELL_NAIVE_13
45.9
B_CELL_NAIVE_14
45.8
B_CELL_NAIVE_15
44.4
B_CELL_NAIVE_16
44.3
B_CELL_NAIVE_17
43.7
B_CELL_NAIVE_18
43.2
B_CELL_NAIVE_19
42.7
B_CELL_NAIVE_20
42.1
B_CELL_NAIVE_21
42.0
B_CELL_NAIVE_22
41.9
B_CELL_NAIVE_23
41.8
B_CELL_NAIVE_24
41.8
B_CELL_NAIVE_25
41.8
B_CELL_NAIVE_26
41.1
B_CELL_NAIVE_27
41.1
B_CELL_NAIVE_28
41.1
B_CELL_NAIVE_29
41.0
B_CELL_NAIVE_30
41.0
B_CELL_NAIVE_31
40.2
B_CELL_NAIVE_32
39.9
B_CELL_NAIVE_33
39.9
B_CELL_NAIVE_34
39.8
B_CELL_NAIVE_35
39.7
B_CELL_NAIVE_36
39.3
B_CELL_NAIVE_37
39.1
B_CELL_NAIVE_38
38.9
B_CELL_NAIVE_39
38.9
B_CELL_NAIVE_40
38.8
B_CELL_NAIVE_41
38.8
B_CELL_NAIVE_42
38.0
B_CELL_NAIVE_43
37.9
B_CELL_NAIVE_44
37.8
B_CELL_NAIVE_45
37.4
B_CELL_NAIVE_46
37.1
B_CELL_NAIVE_47
37.1
B_CELL_NAIVE_48
36.8
B_CELL_NAIVE_49
36.7
B_CELL_NAIVE_50
36.7
B_CELL_NAIVE_51
36.7
B_CELL_NAIVE_52
36.5
B_CELL_NAIVE_53
36.5
B_CELL_NAIVE_54
36.4
B_CELL_NAIVE_55
36.3
B_CELL_NAIVE_56
35.9
B_CELL_NAIVE_57
35.8
B_CELL_NAIVE_58
35.5
B_CELL_NAIVE_59
35.1
B_CELL_NAIVE_60
34.9
B_CELL_NAIVE_61
34.7
B_CELL_NAIVE_62
34.5
B_CELL_NAIVE_63
34.1
B_CELL_NAIVE_64
34.1
B_CELL_NAIVE_65
33.9
B_CELL_NAIVE_66
33.8
B_CELL_NAIVE_67
33.4
B_CELL_NAIVE_68
33.3
B_CELL_NAIVE_69
33.0
B_CELL_NAIVE_70
33.0
B_CELL_NAIVE_71
32.9
B_CELL_NAIVE_72
32.9
B_CELL_NAIVE_73
32.5
B_CELL_NAIVE_74
32.4
B_CELL_NAIVE_75
32.2
B_CELL_NAIVE_76
30.9
B_CELL_NAIVE_77
30.8
B_CELL_NAIVE_78
30.8
B_CELL_NAIVE_79
30.5
B_CELL_NAIVE_80
30.5
B_CELL_NAIVE_81
30.3
B_CELL_NAIVE_82
30.0
B_CELL_NAIVE_83
29.6
B_CELL_NAIVE_84
29.6
B_CELL_NAIVE_85
29.1
B_CELL_NAIVE_86
28.7
B_CELL_NAIVE_87
28.5
B_CELL_NAIVE_88
28.3
B_CELL_NAIVE_89
27.7
B_CELL_NAIVE_90
26.7
B_CELL_NAIVE_91
24.4
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